YALI0F31493g

Overview

Description similar to uniprot|Q06218 Saccharomyces cerevisiae YLR276c DBP9 ATP dependent RNA helicase activity
Locus type CDS
Locus tag YALI0F31493g

Location

Species Yarrowia lipolytica Positions 3913494..3915167
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1674 (nuc.)
Previous locus YALI0F31471g Next locus YALI0F31515g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F31493g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F31493gYALI0F31493g_mRNA-001YALI0F31493g_CDS-001

Nucleotide sequence

 

>YALI0F31493g
ATGACTACCCCCGACCTGGAGGATAAGTCCTTCGACTCGTTCGGCCTTGATGACAGACTG
TTGTCCGGCCTGGCTGCCTGCGACATGAAGCAGCCCACTCTCATTCAGAACACAACCATT
CCTCTGGCTCTGGACAAGGGCGTGGATATCACAGCCAAGGCCGTCACTGGTAGTGGCAAG
ACGGTGGCCTACTTGCTGCCCATCTTCGAGCTGATGCTGAGAGCTGAGAAAGAGAAACGG
GATATCCAGACTGCTCTGATTGTGGTTCCCACGCGAGAGTTGTGTGAGCAGGTGTCCAAG
GTGATCACCAAGCTGACCCAATTTTGCCCCCATCTCAAGTCTCTCAACGTGACTCAGCAG
CTCGGAGACGACGTTATTTCTTCTCTGTTGGAAGAGAAGCCCAGCATCATTGTCGGAACA
CCCTCGAGGCTGCTAAAATACGCCAAGGAGATGGACTGCTCCAAGGTCGGTTATCTGGTC
ATCGACGAGGCAGATCTGCTGCTATCCTACGGCTACAAGGAGGATCTTATCGAGCTGTCG
GAGATGCTCCCCAAGACTAAGCATACCTTCATCATGTCTGCAACACTCAACAAGGAGTCC
GATCTGATGAAGCAGCAGTTCTGCAGAAGCACTGTGGCTAGTGTTGCAGTCACCGCTGCT
GAGGAGGAGAGAAAACTGCTGCAGTACTACGTCAAGTGCAGCGAGAGAGATAAGTTTCTG
CTGGCCTACGTCATGTTTAAGCTGCAGCTGGTCAAGGGCAAGACCATTGTCTTTGTCAAC
GAGATTGATCGATGCTACCGATTGCGTCTGTTCCTGGAGCAGTTTGGAATCAAGGCCTGT
GTTCTCAACTCCGAGCTGCCCATCGCCTCTCGTCTTCATATTGTGGAGCAGTTCAACAAG
GGTGTTTTCAACTTGCTGATCTGTACCGACGAGGCCAACAAGCTGGCTGAGGCTAGTAAA
TCTGCATCCAAGCAGACCAAGGAGGTGTCCAGAGCCCATGAGTACTCTTCAACTCGAGGT
CTTGATTTCATGAACGTGGCTTTTGTGCTCAACTTTGATCTGCCTCTTTCTAGCCGAGCA
TATGTCCACCGAGTGGGCCGAACTGCTAGAGCCAACAAGGCCGGTACCGCACTGTCTTTT
GTTGTGCCTGCCGACCAATGGGGCAAGGATAAGGTGGCCAAGCTGGATACTGCTAAGCGA
GATGAGAAGGTGCTCAAGAAGATCATCAAGAACCAGGAGTCACAGAACATGGAAATCAAG
CCCTATTCGTTCGACATGAAGCAGGTGGAGGGCTTCCGATACCGAATGGACGACGCTTTC
CGAGCCGTCACAACCGTGGGTGTTCGAGAGGCCCGAGTCAAGGAGATCAAGACCGAGTTG
CTCAACTCCGAGCGCCTGGCTCGACATTTCGACGAAAACCCCGACGATCTGAAGGCTCTT
CGACACGACAAGGAGCTCCACACATCCAAGGTCCAAGCACACATGAAGCGGGTGCCCGAC
TACTTGTTGGGACGAAAGGGTAAGCTGGATCCTAATGTGTTTGTGCCATTCAGAAAGGAT
GATAACAAAATCCACAAGAAGTATACCAAGAAGAAGAAGGGCGGCGATCCCCTCAAGTTC
AAGAAGCGAAAATAGATGATATAGAATGGAAATGACAGATTACATGGTATTGAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F31493g_CDS-001

Protein length: 545 aa.
Product: DEAD-box protein required for 27S rRNA processing, putative

>YALI0F31493g_CDS-001 MTTPDLEDKSFDSFGLDDRLLSGLAACDMKQPTLIQNTTIPLALDKGVDITAKAVTGSGK
TVAYLLPIFELMLRAEKEKRDIQTALIVVPTRELCEQVSKVITKLTQFCPHLKSLNVTQQ
LGDDVISSLLEEKPSIIVGTPSRLLKYAKEMDCSKVGYLVIDEADLLLSYGYKEDLIELS
EMLPKTKHTFIMSATLNKESDLMKQQFCRSTVASVAVTAAEEERKLLQYYVKCSERDKFL
LAYVMFKLQLVKGKTIVFVNEIDRCYRLRLFLEQFGIKACVLNSELPIASRLHIVEQFNK
GVFNLLICTDEANKLAEASKSASKQTKEVSRAHEYSSTRGLDFMNVAFVLNFDLPLSSRA
YVHRVGRTARANKAGTALSFVVPADQWGKDKVAKLDTAKRDEKVLKKIIKNQESQNMEIK
PYSFDMKQVEGFRYRMDDAFRAVTTVGVREARVKEIKTELLNSERLARHFDENPDDLKAL
RHDKELHTSKVQAHMKRVPDYLLGRKGKLDPNVFVPFRKDDNKIHKKYTKKKKGGDPLKF
KKRK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG