YALI0F31471g

Overview

Description similar to uniprot|P40362 Saccharomyces cerevisiae YJL069c UTP18 Small-subunit processome protein involved in pre-18S rRNA maturation
Locus type CDS
Locus tag YALI0F31471g

Location

Species Yarrowia lipolytica Positions 3911570..3913279
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1710 (nuc.)
Previous locus YALI0F31449g Next locus YALI0F31493g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F31471g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F31471gYALI0F31471g_mRNA-001YALI0F31471g_CDS-001

Nucleotide sequence

 

>YALI0F31471g
ATGGAGGACTCCATGGACGTGGACTCTTCTGATGACGAGGTGCCGGATAAGGACGAGGAG
GAGCTGGAGCTGGAGAAGGCCGTCTTTGGAGATCTAGAGGGCTTTGAGATGGGTATCAAG
AACATTGCGCTTGAAGAGGCAGAGGAGGAGGATTCCGACGATTCCCATGATTCGGATGAC
GAGAATGATTTTAACAAGATGGAGGACAACCAGTTGTTCTTTGTTGATGGAGGAGACGGG
CAAAAGTACCACTCTGATGACGACTCTGACGACGATTCCGACTCGTCCATGGACTCAGAT
ACCCTCGATGAGACTCTAGAAGAGCACGGAGGACGTGCCGCATGGGCCGACTCGGACGAC
GAGAACGTGCACATTTCGCTGGTGGGAGATCACGATGGTATGCTCAAGAAGCTGCGAAAG
ACGCAGACCCAGGACTACGTTAACGGCAAGGTGTTTTCGCGACGGCTGAGAGAACAGTAT
AGAAAGATCTACCGGGTCCCCGACTGGGCTGCTAATGCATTCAAGGCCAAGGCCAAGAAG
GACTACGATGAGGACGACTCTGAGGGGTCCGATGAGGAGGAGCAGGACGTGCTTACAGGC
ACTTCTCTGAGCGAGGTGCTTCAGCGAGTCACCCAGTACTCCAACAAGGAGTCCAAACTG
CTTCGACACGGCGAAATAGAGGTTGCTCGACTTCAGGACGTTAACTTTGCTGCTCCTTCT
CGAGCTGCCGTGGAGGGTCTCGCTTTCCACCCCACACATTCTCTGCTTCTGACTGGAGGT
TTCGACAAGACTCTGCGACTATACCAGGTGGATGGCAAGAACAACCCTGTTGTCACCACG
CTCTTCATGAGACATACTCCCTTTGCTCACGTGGCCTTCCACCCCGACGGCCAGAGAGTG
TATGCTGGTGGCCGAAAGCAGAAGCATCTGTACATCTGGAATGCTGAGAGTGGAAAGGTG
GAGCGAATGGCACATCTGTACGGCCATGGTGACAAGGTGCGATGTTTTGCGCAGTTCAAG
CTCTCACCAGACGGAAAGTACCTTTGTGTAGTTGGAGTGGACGGCTGGCTGGCCATTCTG
TCGGCTACCTCTGGACAGTGGATCGACGGCTGTAAGATTGAGGGCGACGTTGCCGACTTT
GTGTGGGACGGTGGCTCCATTATTGCTGTCAACACCGCTGGACAGGTGTGGGAATACAAC
GTGGAAAGCCGTTCTTTCACAGCTACTTGGACCGACGAGGGAGGAGTTGGCATCACGGTG
CTGGCTATCGGCGGCAAGGCTAACCAGTGGCTGGCTATCGGCTCCGAGTCCGGCTACGTC
AACGTCTACAACCGACCCAAACTTGCATTGGAGATTGCTAAGGGCCAAAGCCCCTTTGTG
CCCCAGAAACCCACTGCGGTTCTCTCTAACCTAACCACCCCCGTTTCGTCGCTAGTCTTC
TCTCCCGACGGACAGATGCTTGCCATGGCCTCCGACCAGAAGCGAGACTCTCTCAAGCTG
GTCCATGTTCCTTCGTTCACCGTGTTCAAGAACTGGCCCACTCAACATACTTCTGTGGGA
GTTGTCACCAGCGTGGCCTTCTCCCCCAGCTGCGAGTACCTGACTGTAGGTGCCACCAAC
GGCAGAGTCCGAATGTTCCAGCTCGCCCACTACAAGCTTTAATAGTATAGATGCATATTA
GAAGATGTTTATAAGAGAATCTGAGTAGAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F31471g_CDS-001

Protein length: 554 aa.
Product: Small-subunit processome protein involved in pre- 18S rRNA maturation, putative

>YALI0F31471g_CDS-001 MEDSMDVDSSDDEVPDKDEEELELEKAVFGDLEGFEMGIKNIALEEAEEEDSDDSHDSDD
ENDFNKMEDNQLFFVDGGDGQKYHSDDDSDDDSDSSMDSDTLDETLEEHGGRAAWADSDD
ENVHISLVGDHDGMLKKLRKTQTQDYVNGKVFSRRLREQYRKIYRVPDWAANAFKAKAKK
DYDEDDSEGSDEEEQDVLTGTSLSEVLQRVTQYSNKESKLLRHGEIEVARLQDVNFAAPS
RAAVEGLAFHPTHSLLLTGGFDKTLRLYQVDGKNNPVVTTLFMRHTPFAHVAFHPDGQRV
YAGGRKQKHLYIWNAESGKVERMAHLYGHGDKVRCFAQFKLSPDGKYLCVVGVDGWLAIL
SATSGQWIDGCKIEGDVADFVWDGGSIIAVNTAGQVWEYNVESRSFTATWTDEGGVGITV
LAIGGKANQWLAIGSESGYVNVYNRPKLALEIAKGQSPFVPQKPTAVLSNLTTPVSSLVF
SPDGQMLAMASDQKRDSLKLVHVPSFTVFKNWPTQHTSVGVVTSVAFSPSCEYLTVGATN
GRVRMFQLAHYKL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG