YALI0E29359g

Overview

Description weakly similar to uniprot|Q08921 Saccharomyces cerevisiae YPL180w SHD7
Locus type CDS
Locus tag YALI0E29359g

Location

Species Yarrowia lipolytica Positions 3476973..3478864
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1892 (nuc.)
Previous locus YALI0E29337g Next locus YALI0E29381g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E29359g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E29359gYALI0E29359g_mRNA-001YALI0E29359g_CDS-001

Nucleotide sequence

 

>YALI0E29359g
ATGAGCCCGATTACTCAAATTGCAGTTTTCTTTCCAGGCGTTGCAACGAGTGCCTACAGT
ATATCTGGTTCTGCTTACGTGAGCCTCATGTACTCCATGATGCGCGGCATCGAAAAGCCT
CGACAACCCCACGATAAAGTCGCAACAGCAAAAACCAGGCCCATGGTAGTCAAAAAACAA
CACGTGGCATCGAGCAAGCATCGAACTGCCTCGGCCCGCAACCTCACCAAAATGCGCGGC
TCTTCCACCCATCTCTCGGGGCTCCAAAAGGAGGGGAGCGGCGATAGTCTCACTAAGCGC
AAGGCTCGATCGTCAGACTCGCTTCAACGGCTAGCACGACCAAATCTCAGCATGACCCGA
ACCAACTCCGGCAACAGCAATAAGCAGGATACCTCCGCCAGTAGCGACAAGCTCAATCAC
AACGAGACATCTCCCAAGCCTGCCTCATCAAAAGAGGCCAACGACAAGGAGAACGAGGAG
CAACAGAAGTCCAAGGAGCAGGACAAACCCGTGCATTTGCGGCAGGGCGGCAAGGTCGTC
ATCGGACTTCCTGTGAGCGACGATGAGGGCTCTGAGGAAGAGGACGAGGAGGAGGTTGAC
GAGGATAACGGGGATAACGGAGTTGCAGCCAATGGGTTAACAAGAGACATTTCCCGTTTG
GCTATCGGAACAGAGATCAATGAACAGGAGCAGGCCGACGCAAACCAGCAGAATGGGGTC
TACGCAAACGACATACCCGGAGAGGTGGCTGACACGGAGTCGAAGACCATGGCTGAAGGA
GAGGAGGCCGTGGTGGCCATGCAGGAAAAGATGGCAGGAGAGCCAGAGGTTCGCAGGACC
AGCAACAACATCCACAAGGAGAAACATGTACTGATCGACGAGAATGGAGGACATGTGGAG
CACCATGAGCATGCCCAGCCTGGATCTGCTGATTCTCCCGTGAGCCCCAAGAGCGCGCCT
GGCATCACCAACAAGAGACTTGGTAAGTCTGTCGAGAAAGATGGCCCCAGAGACCCCGAA
AGTAGCCAGGAGAATATCTGCGAGGTGTACGACGAGTCAGAGTTCCCCGACTCCCCTGAG
CTCAAGAATGTCAGTGACTCCTGTAATCCCTCGAGGGCAAATTCCAGAAACCCTTCTCGA
AATCCTTCAAGGAACCCATCGTTCGAGGGACTGGGTCTGCTTAGGAGCCTTGGACCTCTC
TCTAACAACAAAATGACCCCTGCATCTAGAAACTCGTCCTATGACTCGCTTAGGTTAAGT
CAGCAGGCCACCGAGAAGGCTCCTACTCTCGAGCTCTCTAGCCACCACGTGCTGAGTAAT
CCTGACGGCTCATCGGGTCACACCCTGGGAAGTAATACCGTGGTCACTAGCGAATCGCCA
CAGAAAACCCCCAACTCCACTCCTCGCAAAGAACAGCGAAGTCGAACACAGCAGAAGCTG
TGGCTTCAGAGAGAGAACGCTATCGACGAGCACGGATCTCCACGATTACCTGCTACTGAG
ATGCCGGATCAACTGGCCAATGGCAAGGCTGAGTACCAGGTTATCGATAAGCAGTACAAG
AGCGTGAGAACCTTTTACAATCCAATTCTGGAGGGTCTTCAACGACATGAAATTTGCCGG
TGGTACGAGAATGGAAAAGTGGTGAATCCCAAGCGGAGAGAGGTGCAACAACGTCAGCTG
CAGAAGGACCTCCAGGCCCCTACAGGAGATGTCAATGAGATTCTGGCAACCCTCTTCAAG
GGAGTTAAAAGTGAGAGTCAAGGTCTGGCAAATCAGGCCCAAAGGGCTACACTTGCTATG
AAGAATGGCGAGTAATTTCACTGTGCGTATAACTTGTATTGTACTTAGTATCTTATATAT
TATTTATAGCCCAAAAACGTCCTGTATTCTAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E29359g_CDS-001

Protein length: 605 aa.
Product: Conserved hypothetical protein

>YALI0E29359g_CDS-001 MSPITQIAVFFPGVATSAYSISGSAYVSLMYSMMRGIEKPRQPHDKVATAKTRPMVVKKQ
HVASSKHRTASARNLTKMRGSSTHLSGLQKEGSGDSLTKRKARSSDSLQRLARPNLSMTR
TNSGNSNKQDTSASSDKLNHNETSPKPASSKEANDKENEEQQKSKEQDKPVHLRQGGKVV
IGLPVSDDEGSEEEDEEEVDEDNGDNGVAANGLTRDISRLAIGTEINEQEQADANQQNGV
YANDIPGEVADTESKTMAEGEEAVVAMQEKMAGEPEVRRTSNNIHKEKHVLIDENGGHVE
HHEHAQPGSADSPVSPKSAPGITNKRLGKSVEKDGPRDPESSQENICEVYDESEFPDSPE
LKNVSDSCNPSRANSRNPSRNPSRNPSFEGLGLLRSLGPLSNNKMTPASRNSSYDSLRLS
QQATEKAPTLELSSHHVLSNPDGSSGHTLGSNTVVTSESPQKTPNSTPRKEQRSRTQQKL
WLQRENAIDEHGSPRLPATEMPDQLANGKAEYQVIDKQYKSVRTFYNPILEGLQRHEICR
WYENGKVVNPKRREVQQRQLQKDLQAPTGDVNEILATLFKGVKSESQGLANQAQRATLAM
KNGE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG