YALI0E28512g

Overview

Description some similarities with uniprot|C4QYY4 Komagataella pastoris Essential nuclear envelope integral membrane protein required for nuclear transport
Locus type CDS
Locus tag YALI0E28512g

Location

Species Yarrowia lipolytica Positions 3371264..3373338
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2075 (nuc.)
Previous locus YALI0E28490g Next locus YALI0E28534g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E28512g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E28512gYALI0E28512g_mRNA-001YALI0E28512g_CDS-001

Nucleotide sequence

 

>YALI0E28512g
ATGTTTGTTGTTGCCTGGCAACCCCCTGCATGCAAGGTAAACATACATAGAATTATTCAA
ACAGGGACAGACCCAAAATCAAACCTCCTAAACATCACATCACGGGCGACTTGCAAAATG
TCATTTTTGGGCGGCACTCTCAATTCTAGGCCCGACGAGGCACGTGACTCCCCTTTGGCC
GATCGAGAGCCGCTTGGCGAACAAAACAACAGCTTTCTCAACCGGCAATCTACACCCAAG
ACTAAACCAGTCAATCTTTCCTTCATCAATAAAGCTCCCATTGAATATGTTACACAGTCA
GAGATGGAGAGAGTTTTTGAAACTGGTAACCAGGTTTATGAGGATGGAAAGAACGTGTTT
CCATCAATTGACCACGATCACATTTTCTCGGTAGGTGATCAGAGAGTGACGATCGACGCC
GATGAGACTGAGAGCGACATCTCCTTATCAGCTTCTGAACACCTTGATAAATATCCGTAT
ATTCGGGATGAAAGCTGCATACAGAATTTAAACGCCCATCTTGGAGAACTCCCTCCTTCT
TCGCCGGATACTGGAAACTCCTCCTCCGAGTCTTTTCGGGATCTCCTCACTTCACCTAGT
GTGCAACAGAATCAATCCAGAATCGAAAACAGACAGAGACTTCCTTCAAGCAATCGTCAA
AGAACTTCCAACCAGCAACAGCAACCGCCTTCTAACACGCAACTGCCCAAGAAGAGCCTA
TTCAAGAGCGCTACAGAAACCACTCGAAAGCTCTTCCCAGATATGAGACGAAGTGTGGTA
AACAACGAGGCTTCAAAGCGATCGGAGCCAAGCATGGCCATGATTCCTTCGCCGCAAAAG
CCTCCTTCACAGCAATACCACATTAACCCCAACGTTCCCAAGGTGGACATGTCGTTCATG
AAGTCTAAACGACGCCCCACTTCTGTGGAATTCTCGCCCATAAAACAGTACCATGAAATT
CCTGGCAGAAGACGAGATGGACGAGGTTATGGCAACAGCTTCCAGCCCAGAGGATCCCGT
TACTCGCCTCAGTTTGACGTCTCCTATGACGACTCGTTTGAACAAAGATATGAGATGTAC
AATGGACGGGGACGAGACGACGAGAACAGAGGTAGTAGAGTAAACGGAACCCGTGGAAAC
GGATTTGAAGGTAACCGCGGCCACGACTATGGAACCCGTGGCATATTTGGTGGAGGAGAC
CGAACAAATGGCATTCGCAGTCAGAGCAATCATGGTGGTCGAGATCATCATTCGGAGGAC
GACTGGGAGGACGAGTACGCTGACTACGATATCAATACCCCCAATCACAACATCAACACA
CCCTGTCGAACCCCGAAACCCAAGTCTCGTGATCACGATAACAGTTCACGAGAGTCAAAA
GATAACCACGCCTCTTCTTCCTCTTCTGCGCAAAGTGGAGCTGCTGCTGCCCTCAATCTT
CCTATTCTTCTTTCAATCTGGTTACAGCTCGCTTACAACGCTATAATCATGGCTGTTGTT
TCGTACTTTGTCTGGACATTCTATTCCACTGTCAAGCGTGATGTCGACATGAAAGTGGAC
GAGTACTCCGCTGATATTCTTCAGGAGATGGCCATGTGCTCCAAGGACTACCTGGCTAAC
AACTGTATGCCCGGAAAGCGGGTTCCTGCTCTTGAGACCATGTGCAATGCTTGGGAGAGA
TGTATGAACAGAGATCCTAAGATAGTGGGACGAGCTCGAGTTTCTGCTGAGACTTTCGCC
GAAATAATCAACGGATTCCTTCGACCCATCTCGTTTAAGTCCATGGTGTTCGTTATCTTC
CTACTTGCAGGATCTCTCTTCGTCTGCAACTTTGGGTTTGGCACGTACAGAGGTCCGCTT
TACCAGCAGGTGAAAGAGAATGAGAAGAAGCAGGACAAGGAGAAGGAGAAGGAGAAGGAG
AAGCGAAAGTCGAGAGACAGAGGAGATTACGAGCGAGTATACGATTCTCCATCCTTCTAC
GTGTCTCCTAGATATTACAGACAGAGAGGATACCGACGAAGATACTAGTTTGTACTCATA
GTTATTTAATTTATGTAAGATAGAGGCGGTTTGTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E28512g_CDS-001

Protein length: 676 aa.
Product: Conserved hypothetical protein

>YALI0E28512g_CDS-001 MFVVAWQPPACKVNIHRIIQTGTDPKSNLLNITSRATCKMSFLGGTLNSRPDEARDSPLA
DREPLGEQNNSFLNRQSTPKTKPVNLSFINKAPIEYVTQSEMERVFETGNQVYEDGKNVF
PSIDHDHIFSVGDQRVTIDADETESDISLSASEHLDKYPYIRDESCIQNLNAHLGELPPS
SPDTGNSSSESFRDLLTSPSVQQNQSRIENRQRLPSSNRQRTSNQQQQPPSNTQLPKKSL
FKSATETTRKLFPDMRRSVVNNEASKRSEPSMAMIPSPQKPPSQQYHINPNVPKVDMSFM
KSKRRPTSVEFSPIKQYHEIPGRRRDGRGYGNSFQPRGSRYSPQFDVSYDDSFEQRYEMY
NGRGRDDENRGSRVNGTRGNGFEGNRGHDYGTRGIFGGGDRTNGIRSQSNHGGRDHHSED
DWEDEYADYDINTPNHNINTPCRTPKPKSRDHDNSSRESKDNHASSSSSAQSGAAAALNL
PILLSIWLQLAYNAIIMAVVSYFVWTFYSTVKRDVDMKVDEYSADILQEMAMCSKDYLAN
NCMPGKRVPALETMCNAWERCMNRDPKIVGRARVSAETFAEIINGFLRPISFKSMVFVIF
LLAGSLFVCNFGFGTYRGPLYQQVKENEKKQDKEKEKEKEKRKSRDRGDYERVYDSPSFY
VSPRYYRQRGYRRRY*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG