YALI0E28490g

Overview

Description similar to uniprot|P53063 Saccharomyces cerevisiae YGL246C RAI1 Nuclear protein with decapping endonuclease activity targeted toward mRNAs with unmethylated 7- methylguanosine cap structures
Locus type CDS
Locus tag YALI0E28490g

Location

Species Yarrowia lipolytica Positions 3370074..3371155
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1082 (nuc.)
Previous locus YALI0E28468g Next locus YALI0E28512g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E28490g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E28490gYALI0E28490g_mRNA-001YALI0E28490g_CDS-001

Nucleotide sequence

 

>YALI0E28490g
ATGAGCTCGTTCTCCACAACAGAACGTCTAGCTGCAAAGCTGAAGAAGCCCAAGGAGGTA
TACAGCTACTCCATCACCGACGGTAAGGTGACTATGGACCAATCTCAGCTCAAGTACTAC
TACCTGCCTGAGGAGACTATCCTGAAGGCTCCTATCGATCTGACCAAAGGCATTGAGAAT
TGGACACAGCCCAACGAGCACGATACTCATCTGGACACACTGCTCGAGTCGCTAAGTAAA
TATGAGCGCGAAACTGGAAGTAAAATCGATGCCGAAATCATCACTTGGCGTGGAATCCTT
ACCAAGATCATGACCCATCCTTACGACCAGTACAATGAGCCTATTGTGCTGAATATTACA
TATTTCGACGGACACTATTTCATTGAGGAAGACTGGCAGAGCAAGCAGCAAGGCAAGAAG
GCGCCCGATGAGCAGATGAAGAAACACATCTACTCCGGCTACAAGTTCGAGAGTGTAGCT
CTACTGAACGAGCCATGGTTCAAGAGCTCACGAGAGGACATTGAATCTCGTTTCGATGAT
ATCCCCAATGGCGACCAGTTTGTGTCCGTGGTTCGAACACAGATTGGAGACAACAAGATC
CTGATCGGCGGAGAGGTGGATTGTGTGTTCGATCCTTGTGCCAAAGGCACTAGCCGATAT
GGAGAGCTGAAAACCTCTCGAGAAGTTCACAATGCCAAGGACGGCGAGATTCTGGAGCGA
AAAATGAACCGTGCTTGGGCTCAATCATTTCTACTCGGTGTGAAGCATATCATCTACGGA
TACAGAACGGGCGATCATAAGCTCGCAGCTGTTGATTACTTCAAAACCGAAGATCTGCCA
ATGTACGCTGGTGCTTCCTCTACCTGGAGTGGAACTGATGAGATCAACTTTCTCAACGCT
GCTTTGACTAAACTGAAGGATCTGCCCAAGGAGGATAACAAGTTGTGGAGACTGGTGTTT
GACTCTGCCAACAAAAAGGTGGATATTACGGAACTTGACGGAGAGAGCTTCTTGCTCAAG
GAGTTTGTTGACTGGCGAAAGTCAATGTAATTTTATAATGATAGATTGTATTTAATTCTT
CG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E28490g_CDS-001

Protein length: 350 aa.
Product: Nuclear protein with decapping endonuclease activity, putative

>YALI0E28490g_CDS-001 MSSFSTTERLAAKLKKPKEVYSYSITDGKVTMDQSQLKYYYLPEETILKAPIDLTKGIEN
WTQPNEHDTHLDTLLESLSKYERETGSKIDAEIITWRGILTKIMTHPYDQYNEPIVLNIT
YFDGHYFIEEDWQSKQQGKKAPDEQMKKHIYSGYKFESVALLNEPWFKSSREDIESRFDD
IPNGDQFVSVVRTQIGDNKILIGGEVDCVFDPCAKGTSRYGELKTSREVHNAKDGEILER
KMNRAWAQSFLLGVKHIIYGYRTGDHKLAAVDYFKTEDLPMYAGASSTWSGTDEINFLNA
ALTKLKDLPKEDNKLWRLVFDSANKKVDITELDGESFLLKEFVDWRKSM*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG