YALI0E28226g

Overview

Description similar to uniprot|P20053 Saccharomyces cerevisiae YPR178w PRP4 U4/U6 snRNP 52 KD protein
Locus type CDS
Locus tag YALI0E28226g

Location

Species Yarrowia lipolytica Positions 3331078..3332618
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1541 (nuc.)
Previous locus YALI0E28204g Next locus YALI0E28237g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E28226g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E28226gYALI0E28226g_mRNA-001YALI0E28226g_CDS-001

Nucleotide sequence

 

>YALI0E28226g
ATGGAACTTGTGGATCTGGAGTCGATCAAGACGACGGTGGACTCTTCTTCAGTTCGGGAA
GAGGCCGTTGCGGCCCGTCAGCTGTTGGAAAAACAACGTCGAGCTGATATTCTCAAAAAA
CTGCATGTTCCTACAGACGATAAGGATGTTAGAGCGAAACTACGATCGTTGAATGAGCCC
ATTACTCTTTTCGCAGAAGACAAAGCTGATCGACGGACCCGTCTGGGTCAGCTAATGGTG
GACGAGTTTGATCGGGAAGGTCTGCAGGACGAAGAGAGCGATTCTGACGTTTCTATGGAC
GACGACGAGTTTTTTACGCCAGGAAGTGAAGAGTTGCTTGATGCAAGGAGGCAGATAACA
AACGACAGTATCTTGAGAGCAAGGGACCGACTCACGACACAAAAGCAACAGTCGGAATTG
TCCCTGGTGGAGACAGTTAACCTACGACGAGATAAGATGGCCCCTATAGAGCAGTATCAG
CTTCTGGGATCACAGTTCGTTTCCACACGTCCAGCAGGGGCCGTGGCTTTTGGAAGCGAC
TCTATACTGGCTGCATCATCGTGGAACGGCGAGATCAAGCTAATGGATGTACCGAATCTG
AATACCAAGGCTGTGTTGAGAGGGCACGTGGATAAAGTAAGTGCTTTGAAATGGGCACGT
AATATCTTGCTGAGTGGATGTGGAGAGGGAAAGCTGCTGTTCTGGGATTCCAGCACAGAA
GGCAACGAACATACTGCATACAGAACGGTGTCTGAAGCCCACAAGGGCCGTATCGCAGGT
CTAGACGTTCATCCAAGCGGGCAGTGGGCTGCTACCGCGTCCTATGACTACACCTGGGCT
CTGTGGGACATTGAGAGCGGTACCAAGCTGTTGTCTCAAGAAGGACACTCTAAGGGTGTC
CACTCTGTGGCCTTCCACCCGGATGGAGCTCTAGTAGCCTCTGCTGGCTTGGATGCAGTA
GGCAGAGTGTGGGATATGCGATCTGGACGAAGTATTCAGACTCTGGAAGGCCATATCCGA
GAGATATACAGTCTGGGATGGTCTGGTAACGGGTTCTATCTTGCATCTGGATCTGCTGAC
GGATCTGTCAGAATATGGGATCTGCGTGCTCAAAAATGTTCCCACACAATCCCTGCACAT
ACAAAGATTGTGTCGAGTGTTCAGTTTGACAAGTCGGGCTCATTTCTCGCATCTACGGGA
TACGATGGCGACTTTAACATCTGGAATGCCGATTCGTGGACCCTGGCTAAAAGGTGGAAG
ACGCAAGACCGAATCATGGGCATGGATTTGGGACCTGGAAACGAGTACTTCGCCACCTGT
GGCTGGGATCGAACAGTGAAGTTGTGGTGCAAGGAGTAGGCGTTGAAGGGGTAGGAACAC
ATACCGTATCGGTAATATATTGCATTCAAACTACAAGTACTTGTAAGTAAAAATAGAACC
ACTCAATCCGTCAGTAATTAATTAAACCTCCTATAATACATAATATATTTCATCATTCGT
CATCCGTCTACTCTGACTGCGTATTAGGTCCATCGGCAGGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E28226g_CDS-001

Protein length: 453 aa.
Product: Splicing factor, putative

>YALI0E28226g_CDS-001 MELVDLESIKTTVDSSSVREEAVAARQLLEKQRRADILKKLHVPTDDKDVRAKLRSLNEP
ITLFAEDKADRRTRLGQLMVDEFDREGLQDEESDSDVSMDDDEFFTPGSEELLDARRQIT
NDSILRARDRLTTQKQQSELSLVETVNLRRDKMAPIEQYQLLGSQFVSTRPAGAVAFGSD
SILAASSWNGEIKLMDVPNLNTKAVLRGHVDKVSALKWARNILLSGCGEGKLLFWDSSTE
GNEHTAYRTVSEAHKGRIAGLDVHPSGQWAATASYDYTWALWDIESGTKLLSQEGHSKGV
HSVAFHPDGALVASAGLDAVGRVWDMRSGRSIQTLEGHIREIYSLGWSGNGFYLASGSAD
GSVRIWDLRAQKCSHTIPAHTKIVSSVQFDKSGSFLASTGYDGDFNIWNADSWTLAKRWK
TQDRIMGMDLGPGNEYFATCGWDRTVKLWCKE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG