YALI0E28204g

Overview

Description similar to uniprot|Q06623 Saccharomyces cerevisiae YPR179c PLO1
Locus type CDS
Locus tag YALI0E28204g

Location

Species Yarrowia lipolytica Positions 3329261..3331192
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1932 (nuc.)
Previous locus YALI0E28182g Next locus YALI0E28226g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E28204g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E28204gYALI0E28204g_mRNA-001YALI0E28204g_CDS-001

Nucleotide sequence

 

>YALI0E28204g
ATGGACATTGGAAAAATTCTGGACGTGACGCCGGAGCCGATTCTCTCGACAGATGCGGTG
ATCAACGCTGCTTCCGACAACCGCAGCATGGATTACTGTCTGCCAGTCCAGATGGCCGAG
TTCCAACGAGAACTGACGGACCAGGTGGTCAACCTGCATTATTCTGACATTCTGCGGTTC
TACGACACAATCAGTCCGACACAAAATCAGTCGTGCGCACCCTCTGATTGGGCCGATTCT
CTGGGAGCCATGTATCAGGACTCGTTACTGGTTGCAACCCATCCGTACCTGCTGGTGGAC
CACTACATGCCCCGGAGCCTGTTGCTGAAAGAAATCCCCGACAAGCTGGCGCGTACCAGT
GCCAAGTTCGCCGTGCTAGGCGACATTGTGTCACTGCTGGAAAACAAGCAATACAATGTG
GCTCTGATAGCGCGGTCAGGAAAGACGTTGGATTTGGTGGAGGCATTTCTGCACGGCAAG
CCTGTTTCTTTCGAGAGACATACAGGCCCATATCTGAGAGAGCCGTCGGCCAAGCAGCGA
GCACACAAAACGACCATTCATGTCATGTCGTCGTCGCTGCTGGAGAGTAGTTACAATGGC
GATCATCGTTTTGATCTGGTGATTGCCTTCGACAGCACGTTCAACCCAGCAGAGGTGCAT
GTGGAGGCTCTACGGATGCACAAGAGGAACATTCCCGCTCCCGTGTTGCGTCTGGTATCA
AACCTCTCTGCTGAGCATGTCGCATACAGCTTTGGACTCACTGCTAACCCCGATAGAGTG
TTTACGGAAGAGGTGATTGCAGCTCTAGTGGTGCTGAGAGACAAATCTGGAACAATCCCC
GCTGAGATGAAGTCGTTGTACCTGCAGCAGCTTCAGCCATTGGCCTACTGGTTTGCCGAT
TTGTCTCTTCCTTGGCCACTTCCCGATCTAGCACCCATTTCCGGGTACTCCAAATTGGAC
GTGGAGACCTCAATGGCCTCGTCGTATCATCGTCGATCGGCCATTCCTGGAACCGCCAAT
GACCCTACGGACAATTCTTCTCAGCCTTCTAAGCGGTACAAGCTGGACCCTATCAGCGCA
GACCACTTTGCTCCTCCACACGATTATGCACATGGTCGATGGACAGGTTTGACACAGGGG
CTTCTGGAGCAATACAACTCGCTTGTTGGCCGAGAACGGCAACTAGTGTCGGAAATCGAG
TCGCACAGGAAGCTCGCAACTACGCAGCAGCTCAAAATGGAGTCTCAACAGGACGAGATT
GCGCGTCAGGTGCGTCAACACGCGTCCTTCGAGGAGACTATTGGCAAGCTGGAGCGAAAG
ATCGAACGAGGAGAATCAGATGCGGTTCGAAAAGAGGAGGCAGTTGTTCGATTGCAGGAT
GAGGTTGCTTCTCTGAAGGCTATTTTGGCTTCTGGAGAGGACGCAGACATCAAAACCAAA
CAGCAGGAGGAGATTCAGGCGCTGAAGACGAGCCTGCAAAAGGCCAATGCTACTGCTGAT
GCTCGGTCCAATGAGAATGACTACATGCGTTCCGAATACCAAAAGGCATCCGAGAGCGCG
TCCGAGGCGTTGGCGAAGGTGGGATTGCTTACAACCGAGCTGGCTGAGGCCAACCAGCGT
GCCGATGGTGAGTTTTCTGCCCTCAGAAAGCTCACATTCGACGAAGAGCGAGAAATTCGG
GATTCGGAGATTGCAGAGCTCAAGGTTAAGGTGGAGAACTTGGAGGAGCAGCTCAAGAGA
CAGAGCGAGGCAGCTCCCAAGACATCACGTGCGAGGTACGGTGTGAGATCGAGCTCGGTT
CCTAGACGAGCTCTTTCTCCTGCCGATGGACCTAATACGCAGTCAGAGTAGACGGATGAC
GAATGATGAAATATATTATGTATTATAGGAGGTTTAATTAATTACTGACGGATTGAGTGG
TTCTATTTTTAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E28204g_CDS-001

Protein length: 617 aa.
Product: Subunit of the HDA1 histone deacetylase complex, putative

>YALI0E28204g_CDS-001 MDIGKILDVTPEPILSTDAVINAASDNRSMDYCLPVQMAEFQRELTDQVVNLHYSDILRF
YDTISPTQNQSCAPSDWADSLGAMYQDSLLVATHPYLLVDHYMPRSLLLKEIPDKLARTS
AKFAVLGDIVSLLENKQYNVALIARSGKTLDLVEAFLHGKPVSFERHTGPYLREPSAKQR
AHKTTIHVMSSSLLESSYNGDHRFDLVIAFDSTFNPAEVHVEALRMHKRNIPAPVLRLVS
NLSAEHVAYSFGLTANPDRVFTEEVIAALVVLRDKSGTIPAEMKSLYLQQLQPLAYWFAD
LSLPWPLPDLAPISGYSKLDVETSMASSYHRRSAIPGTANDPTDNSSQPSKRYKLDPISA
DHFAPPHDYAHGRWTGLTQGLLEQYNSLVGRERQLVSEIESHRKLATTQQLKMESQQDEI
ARQVRQHASFEETIGKLERKIERGESDAVRKEEAVVRLQDEVASLKAILASGEDADIKTK
QQEEIQALKTSLQKANATADARSNENDYMRSEYQKASESASEALAKVGLLTTELAEANQR
ADGEFSALRKLTFDEEREIRDSEIAELKVKVENLEEQLKRQSEAAPKTSRARYGVRSSSV
PRRALSPADGPNTQSE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG