YALI0E27225g

Overview

Description some similarities with uniprot|H8X170 Candida orthopsilosis spermidine export pump
Locus type CDS
Locus tag YALI0E27225g

Location

Species Yarrowia lipolytica Positions 3227160..3228185
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1026 (nuc.)
Previous locus YALI0E27203g Next locus YALI0E27247g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E27225g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E27225gYALI0E27225g_mRNA-001YALI0E27225g_CDS-001

Nucleotide sequence

 

>YALI0E27225g
ATGACCATACCATCAGATACCTCAGAGAAGAATATACCAAAGGACTTTTCCGTAGAAAAC
ATTTACGGGAAATTAACTGATGATGAAATATTGCAGAGTAGGAAATCTCATATCCAGTCG
GTGAGATTGGCCTTCAAGTCGCTACCAAAGACTCGAACCAGAGTCCCTCAACATGATGCC
TCTTTCGTGGGGATGGATCCCGAACTAGTGACTTTCAAAAGTGCTTCAGATCCTTTGTAC
CCCAAAAATTGGCCCCTAAGAAGGAAGCTCTTCACTGTTGTGGTGGCATCTCTTTATGTC
GGAGCTGAGCCCTTCGTGTCTGCAGCCTTTCCAAAAAGCACTACGCTGTCGCTTGCCCAT
AGCGGATCAAGCGTTTTTGTCATGTTGATGGTGAAAATTGTCCCACGATTGATAGGACTG
GTCATTGTGGGGCCTTTGTCTGATTACTTCGGTCGTAAGGTGCTGTTGAACGCGTCTGTT
TCAATCTTGATTGGGTCCTCAGCTCTGGTTCACGTCTACTTTGACCGGTTCTCTTTCTTC
CAATTGGCTTCTTTCAGTTTTTTATCAACTCTGGGGGCTTCCTCCCCTTTATCTGTGGGG
TCAAAGATTCTAAATGACGTCTTCTCACCCTCCGCTGTAGGTGGGGGGCTCCTTGTCTAC
CTCTGTGGACCCGTGGTTTCCTACTTTGGAAGCCCGGTGGCCGTAAATCTAATAAAGGAG
TTTCCTGCTGGTTATTCGTCGGGTTGTTTCTGTGTAGTCATGGCATTGCTGTTTGCTTTG
ATTCCAGAAACCTCACCTGCGATGATTCTTCACCAAAAGGTTACCGTGTTGAGACAGTTA
ACCGGAAATAAGCATCTCCACAGTCTGTATGAAATCACGCGGGAGCCAATCTCTGTCCAA
TTACGACGACATCTTGGCAGAACCTTTGCAATGGCTGGATCCCATCCATCACTGTACATA
GCCATGCTGATAGGGGCCTTGTTGTTTGGAGTGATAGCAGCAATATGGGCGCTCTGGTGG
GCATGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E27225g_CDS-001

Protein length: 342 aa.
Product: Conserved hypothetical protein

>YALI0E27225g_CDS-001 MTIPSDTSEKNIPKDFSVENIYGKLTDDEILQSRKSHIQSVRLAFKSLPKTRTRVPQHDA
SFVGMDPELVTFKSASDPLYPKNWPLRRKLFTVVVASLYVGAEPFVSAAFPKSTTLSLAH
SGSSVFVMLMVKIVPRLIGLVIVGPLSDYFGRKVLLNASVSILIGSSALVHVYFDRFSFF
QLASFSFLSTLGASSPLSVGSKILNDVFSPSAVGGGLLVYLCGPVVSYFGSPVAVNLIKE
FPAGYSSGCFCVVMALLFALIPETSPAMILHQKVTVLRQLTGNKHLHSLYEITREPISVQ
LRRHLGRTFAMAGSHPSLYIAMLIGALLFGVIAAIWALWWA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG