YALI0E26873g

Overview

Description weakly similar to uniprot|P39520 Saccharomyces cerevisiae YLR223C (ohnolog of YDR223W) IFH1 pre-rRNA processing machinery control protein
Locus type CDS
Locus tag YALI0E26873g

Location

Species Yarrowia lipolytica Positions 3184343..3186376
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2034 (nuc.)
Previous locus YALI0E26851g Next locus YALI0E26895g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E26873g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E26873gYALI0E26873g_mRNA-001YALI0E26873g_CDS-001

Nucleotide sequence

 

>YALI0E26873g
ATGGCCAGACGAAAATCCTCGGTCCATCGGCCAACCTACTCCGGTAAAAGACTGGAGGAT
GTCCTACAGATGAAGAAGACGGGGCGAAAGACCCCCATGCCTGCTCGAAAGGCCCCTGTG
GCCAGCAAACGATACGGACGCAAGGCTCTCTACCAACCAGACCTTTCTGTCGAGGAGGAG
GACGACAATGACGAAGACCTCGACTCGGAAGATGAAGCATTTGAGACCATCATTGCAGCC
GTCAATGATGAGGGCTCTCAAGATGAAGCCAGCAATGGTGAAGATGACGATGATACCGAT
AGTGACGATGAAGATGAAGACACTGACTCTTCCATTGACGAGACCTCCCTGCCAGAAGCA
TACAGGCGGCGCAAGTTTGGAGCCAAGTCTGCCAAAAAGAGCATGCTTCAAAACGAAAAC
GAGTCTGCCATTGCTGACAGCAGTGAGGAGTCTGACTTGTCCAGTCTTTCGGACATTGAG
ACTCGGCTTAGTTCCAAAGACAGCACTCTGGTGCGACGAAAGTCTCGCCGAGGCTCCGTT
GTTGACCATACACTTGATGAACATGTGGAGTTCCCTCGTCATAAAGAGGAGGAAGGAGAC
TCTTCAGATGACTCGTTCGAAGAAGACTCTCTACTCAAGGCTATCGAAGCAGACTCTTCG
CCAAACCCTGATGAGAGCGATTTCGATGACGAGATTGGAGATCTTGACGAGGAGGAGTTT
GAGAACGGAGACCTGGGCTCCCCCCTGTCTGAGGGCGACAACTCGTATTCGTCAATCAAC
GACTTCTCCGATGAAGTTGACAAGGACTTCGACGCCATCAACGACAATGACATTGAGAGA
GAGGAGGAAGACGCCATTCTACAGGAGATGGCAGAGAACGGAGATAGGCTGCAGACTCTG
AGCCCCACAGATGACGACGAGTCTGTGGCGTCATTCGGCAACTACTCCCGACGAAACTCT
CACTCCCAGCATCACTATACCGGATACTCGTCTGACGAAGACGACTATTCGTTTGAGGAC
AACGACCCCTTCTTTGAGCCTCGAGACCCCAACCAAGTTCTCATTACTAACGGCGAAATT
GGCGTTGAAAACAACAACACTCTCAACAATACCATTCGCAATAATACTACCACGGATACT
CCCAAGGGGTTTACCTCAGACGATGACTCCTATCTGTTTGGATACTTCTTTTCCGACGGA
TCATCGTCCGAGAATGAAGACAAGATGAACAACTCTACCAAACGAAGACCTTCTCTCTCG
ACTCCTAAGAAACCTCCTGCGGCAGGCTCGTCTTCTTCCATCTTCAAGAACAACCAGAAT
GGCTATAGCGACTATACTGTTGACTCTGGAGACTCGACCGACGAAGACACCACGTTGCCT
CCCCGAACACAGAAGAAGTGCAACACAGCCACGGAGATTCTTTCATCCTCCAACATTGCA
TCGCGACCCCCAATGCTGGGTTCTTGGGTCATGACCAAAGAGAGGCCATTTGGCATCATT
GACGGACTCACTACACGGTCTCTTTCGGGTCAGAAGAGTCCCCCCACTACCAATGGTAAG
AGCAATTCCAACGGTGGCATTCGATACTCGACAGCTATTGAGTCAGATGACTGCTCCGAC
ATTTCAGATCTGAATGACATTGTCCTCGACGAGTTCATCTACACCAGTGATCTGGATGAA
GAGGCCCCCAAGGACGTGTGTCAAGAGGCCCAGCCGTACTCGACCTCTTCCAATGTGCCT
CTGTCGGCTTTCAGAAATCGAGGACTTATTTCCAACCCTCTTTACCAGCAGCGGTTTACG
GGAACTCCCATCCCCTCCAGACGTCGACCCTCTCACTCTAGAGAGGCTATCATCACTCCT
GTGCGAGGCTTGAAGAAGATCAAGAAGAAGCAGTTCCGAAAGGACTTGCTAATGCATAAG
GACTACGATGGGAATGACTATGATAGTGGAATGGTGGCCGAGTACTCCGATGGTTTCAAT
GGCTTTTATGGTGGTTTATAACGTGTATATCGTATAATAGATTATTTATTCACA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E26873g_CDS-001

Protein length: 667 aa.
Product: Conserved hypothetical protein

>YALI0E26873g_CDS-001 MARRKSSVHRPTYSGKRLEDVLQMKKTGRKTPMPARKAPVASKRYGRKALYQPDLSVEEE
DDNDEDLDSEDEAFETIIAAVNDEGSQDEASNGEDDDDTDSDDEDEDTDSSIDETSLPEA
YRRRKFGAKSAKKSMLQNENESAIADSSEESDLSSLSDIETRLSSKDSTLVRRKSRRGSV
VDHTLDEHVEFPRHKEEEGDSSDDSFEEDSLLKAIEADSSPNPDESDFDDEIGDLDEEEF
ENGDLGSPLSEGDNSYSSINDFSDEVDKDFDAINDNDIEREEEDAILQEMAENGDRLQTL
SPTDDDESVASFGNYSRRNSHSQHHYTGYSSDEDDYSFEDNDPFFEPRDPNQVLITNGEI
GVENNNTLNNTIRNNTTTDTPKGFTSDDDSYLFGYFFSDGSSSENEDKMNNSTKRRPSLS
TPKKPPAAGSSSSIFKNNQNGYSDYTVDSGDSTDEDTTLPPRTQKKCNTATEILSSSNIA
SRPPMLGSWVMTKERPFGIIDGLTTRSLSGQKSPPTTNGKSNSNGGIRYSTAIESDDCSD
ISDLNDIVLDEFIYTSDLDEEAPKDVCQEAQPYSTSSNVPLSAFRNRGLISNPLYQQRFT
GTPIPSRRRPSHSREAIITPVRGLKKIKKKQFRKDLLMHKDYDGNDYDSGMVAEYSDGFN
GFYGGL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG