YALI0D20460g

Overview

Description some similarities with uniprot|P39113 Saccharomyces cerevisiae YMR280c CAT8 and other transcription factors
Locus type CDS
Locus tag YALI0D20460g

Location

Species Yarrowia lipolytica Positions 2593606..2596392
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2787 (nuc.)
Previous locus YALI0D20438g Next locus YALI0D20482g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D20460g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D20460gYALI0D20460g_mRNA-001YALI0D20460g_CDS-001

Nucleotide sequence

 

>YALI0D20460g
ATGGACACGGAACACGAGGCAAAAATGGCCGATCCCAAGCGAACGGTGCAGGCGTGCGAT
CTGTGTCGCCAGAAGAAATCGCGGTGTTGTGGCACTCGACCCACGTGTGCAAACTGCGTG
CGCAGCGGCTCCAGCTGTGTGTACGCAGCCCAAGCGCGCAAACGACGACGAACCAAGCTG
GAGGTGATGGAGGAAAAGCTGCAGATCATGTCGCAGGACGAAAACTGCGACGTTGCGGCG
CGACAGGAGCTGCTCGAGAGCTTTGCACGCCGACTGGAGAAGAAACGAAAGACTGAGAGG
ATCGACAGTCAAGTCAACAATGTGGTGCCCCAGATGTTTGCTGGAATGGTGGCTACGCCC
TCGGAAACGCCCACAGACGTTCAGACAACCATGAACGCCATGGTCACGCCATCCACGACC
CCTCCAGATCCGATACAGGCCCAACAGGCCCAACAGGCCGTCGAACCCATTATGGATGTC
CAACACATCACCCCAGACACACAGAACCTGGCGAATCACGACACCCACGACTCTCATGAT
ACCCACGATTCTCACGACACCCACAATACCAACCACAACACGCTAACATATTCCAACCCG
TTCACATATGACGACCCCATGGCCAACCGGCCCGTCTTCTGCTCCACTTCCGACGCTGGT
CTTCGGTGGATTGAGACACAGACGTGCGACGTTGGATTCCACAAACGGTACTCCCACCTG
ACTGAGTCACTGTTTGAAACGGGACTCAACTTTCTACGCAACTGGAGACCACCGGTGCTG
CCTAGCAGACCGATTTGCATGAACGAAGACGTGCTGCGGTTTCTGGCACGCACGTTTCTG
GAGGCTGCTAACCCTTATCTCGATATTGTGGATGATGTCGACGTGCTGAGGGTCTTCAAT
GTGGTCATTGAATCCGATAATGCCAAGCAGGATGAATATTACAGAGACGGCCACGTCCAG
CTGTATAATCTCTCGTGTCCCGAGTCTCTGCTTTTCCACAGCTGCGTGCTGGTCAGCTTG
GAGATTTTCATGGACGTGACACGCAACAAAAACGCAGCTGAACTCGCAGACACAATCTTG
CCATTGGAGAAGGCCACAGCTGTAAGAGACCAGGTCTATATCAATGCCCAGAGAGACTAC
ATGAAGCTCATTAGTGGTGGAGGAGGACCCGAGGGTCTAGGAAATACATCAGATACAAGT
AACTACACACAACTATCTCTACAGGCTTGCTTGGTGTTATTGACTAGTACCACGGCGTCC
AGTGAACCTCAACTGATGGAACCTCTCATAACAACCTGCATGAGACTCTGCTACCAGATG
AGATTGCACAGAGAAGAAAGCATTGGGTTTATGAGCCGACATCGAACTCTCAGAAATTGC
TTTTGGGTCACCTATATGTTTGAGGCCACTTTTCTGGGCCGGTTGGCTCGTCGTCCTCTG
GTTCGAGACTATGACATTTCTCTCTTGTACCCCGAATCGACTCTTCAAGACCAACACCAT
GGTCCTTTCACACCCAAGATGCACTCCACTGCCAACACCCCCTGCAACTCGTGGTTGAAT
CCATACATTCGTCTGTGCCGTCTTCAGTCTCGTGTCTGTGACGAGCTGTACAATAACGTG
TTTCCTCCCGATACACGTGACCCTGTGGAGCTGTTACACATTGCCTCAAAACTCGACTCC
GAGCTACAATCGTGGCGAGCCTCAGTTCCTCATGATCTCGACTTTGAAGCCGAGTATGAT
GCAGTGCATCCTATCGTTCTGGAAGCATATGCTCCCTTACATGGAGTGCACATCCGACCC
GTCAATATCCAGGGTCTCATCAACGAACGGTGTTGCAACGCTTACAGATTCCGGGTTCGA
AACCTCGGTCTCACTCTGCTCAACTGCATGTATTTGCACGTGACCATTCTCATCCACAAG
ACTTTCTTCTGGTACCCGCGATGGGCTCTTCCGGTCAACCTGAGTTTTGTGAGGCCCACT
TTTGGCTCGTACGACGTTGACGCGACTGCGCAGGCTCTCAATCCAGCAGAGTACAGCAGC
AACGGCAACTACATTCCACCGCATCGAAACGAGCATTTTTCTGCGTCCTTCTCACAGAAC
AGGTCTTACACACAGAGCAACCAGTCCACCGGACAGGCGTTCAACCTGCCACATGTTGAT
ATTCCTTCCAAGCGTGTGTTTGCTTCCAACTCGTTGGTCCGATCCTCTGCTCGAAAGATC
TGCAACGCTCTGACCCGTATGGATATGCGATACACGTCGTTCATTTGGATCTTTGCCTTC
TTTCCCACAGTAGCGTTCGATGTGCTATTCCAGACGATCATCCTCACTCCTCTGGACTCT
ACCACGTCAGCGGATCTGTCCCGGATGCGGTTCTGCATCAACTTCATGAAGAAACTGAAA
AACTCCAACATCAAAACGTCTGAGCAGGTGTTTCTGCCCATCTACGAGCAGCTGTTGGCG
TACGCCACGGGCTTTGTGAGCAACTGTTTGACCACAAACGACGACGATGTCCAAGACAAG
GGCGTGGGCGGAGAACTCGGCTTCTTCCCTCAAGCTACAGGAGACTCATACTGGGATGGA
TCCACTGGGGAGATGCCTGAATTTGTGGCAATGTCCAATACTGCTCCTGTTATGATGCCA
GGTGAGTCGTGGACTCACAGCGGAGATGAGAATCGAGTGGTGAGGAGGGTCATGTAGCGC
TGGCAGCTCACGGCGTGGCTCAACAAGTGCAGCTTGTCGCTTATTTATCTATTTTGGAGA
CATGTACAAAATTCATTTCTAAAGATT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D20460g_CDS-001

Protein length: 899 aa.
Product: Conserved hypothetical protein

>YALI0D20460g_CDS-001 MDTEHEAKMADPKRTVQACDLCRQKKSRCCGTRPTCANCVRSGSSCVYAAQARKRRRTKL
EVMEEKLQIMSQDENCDVAARQELLESFARRLEKKRKTERIDSQVNNVVPQMFAGMVATP
SETPTDVQTTMNAMVTPSTTPPDPIQAQQAQQAVEPIMDVQHITPDTQNLANHDTHDSHD
THDSHDTHNTNHNTLTYSNPFTYDDPMANRPVFCSTSDAGLRWIETQTCDVGFHKRYSHL
TESLFETGLNFLRNWRPPVLPSRPICMNEDVLRFLARTFLEAANPYLDIVDDVDVLRVFN
VVIESDNAKQDEYYRDGHVQLYNLSCPESLLFHSCVLVSLEIFMDVTRNKNAAELADTIL
PLEKATAVRDQVYINAQRDYMKLISGGGGPEGLGNTSDTSNYTQLSLQACLVLLTSTTAS
SEPQLMEPLITTCMRLCYQMRLHREESIGFMSRHRTLRNCFWVTYMFEATFLGRLARRPL
VRDYDISLLYPESTLQDQHHGPFTPKMHSTANTPCNSWLNPYIRLCRLQSRVCDELYNNV
FPPDTRDPVELLHIASKLDSELQSWRASVPHDLDFEAEYDAVHPIVLEAYAPLHGVHIRP
VNIQGLINERCCNAYRFRVRNLGLTLLNCMYLHVTILIHKTFFWYPRWALPVNLSFVRPT
FGSYDVDATAQALNPAEYSSNGNYIPPHRNEHFSASFSQNRSYTQSNQSTGQAFNLPHVD
IPSKRVFASNSLVRSSARKICNALTRMDMRYTSFIWIFAFFPTVAFDVLFQTIILTPLDS
TTSADLSRMRFCINFMKKLKNSNIKTSEQVFLPIYEQLLAYATGFVSNCLTTNDDDVQDK
GVGGELGFFPQATGDSYWDGSTGEMPEFVAMSNTAPVMMPGESWTHSGDENRVVRRVM*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG