YALI0D20416g

Overview

Description similar to uniprot|P22213 Saccharomyces cerevisiae YDR189w SLY1 hydrophilic suppressor of YPT1 and member of the SEC1P family
Locus type CDS
Locus tag YALI0D20416g

Location

Species Yarrowia lipolytica Positions 2582870..2584781
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1912 (nuc.)
Previous locus YALI0D20394g Next locus YALI0D20438g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D20416g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D20416gYALI0D20416g_mRNA-001YALI0D20416g_CDS-001

Nucleotide sequence

 

>YALI0D20416g
ATGAACAACAGCACTTTGCCCGAGTCGTTTCGAGACAAGCAGATTGGTGAGTATCACGTG
ACTAACCGACAATGATTCGCTGACTAACACAGCCGCGATCACGCGTGTTCTCTCTGGAGA
AAATGGGAGTGCCAACAAAAGCCAGGCTTGGAAGGTGCTGGTCTTCGACAAGTTTGGCCG
AGATGTGATTTCGTCGGTGATGCGAGTCAACGACCTGTTCCAGAACGGAGTCACCATCCA
CATGTTGCTGGATTCCGATCGGTACGCTATTGACGTTCCGGTGGTGTACTTTGTGCGACC
TACATCCGACAACCTTCAAAAGATCACGCGAGACCTGCATTCCCAGCTCTACGAATCCGC
GTCCGTCAACTTCGTGTCTCCTCTTCCCCGTCAGCTGCTGGAGACCTTTGCAGCCGACAA
CGTGGCCACAGCCTCTCAGATTACTCAGGTCTACGACCACTACCTCAACTACGTTGTTTC
CGAGGCCAACCTCTTCTCTCTGGCCTTGCCTAACATCTACTCTGAGCTGGCATCCCCCAA
GATGGACGAGGACTCGCTCAATGCCATCGTCGACCAGATTGTGTCTGGTCTGTTCTCTGT
GGTTGTCACCCAGGGTGAGATTCCCATCATTCGATGTCCCAGAGGAAACGCCGCCGAGAT
GGTCGCCCAGAAACTCGACTCCAAGCTCAGAGACCACGTCAACAACCTCAAACTGACCAC
CAACCCTCTCTCGCGACCGGTGCTCATGATTCTTGACCGAAACATTGATCTCGCGTCCAT
GCTCCAGCACTCGTCCAACTACATGGGACTGGTTCACGACGTGTTTGAGTCCGAAAGAGG
CCAGATCCGAATCGCCAAAGACAATGGCACCACCGAGTCGTACGATGTGGCGCCCTCCGA
CTTTTTCTGGAACCAAAACTCGCTTCTTTCTTTCCCCGAGGTGGCGGAGTCTATGGACAA
TGAAGTCAATAAGTACAAGGAGGAGTACAGCCAGATCACTGGAGGCGCCAACATCAACGA
TATGGACACAGATGCATCCCCCACGCATCTCAAGAAGGCTATCTCGGCCATCCCCAAACT
CACGGCTCGAAAAGCCGTCATCGATATGCATATGAACATTGCCACTGCTCTGGTGGACCG
AATCAAGAAGAGACAGCTGGATATTTTGTTTGAGGCCGAGGACGGGCTGGACAAGCAGGC
TCTCTTGCCTCTGCTCAAGAACGAAGAGCTGTCTGGCACGGACAAGCTGAGAGCCTATAT
TTGTGTCTACCTATCCGGCACTCTCTCGGCTGCCGAACAGAAGGAGTACGAGGGTATTCT
TAGCACACAGGGAGTGGACATGGCTGCGCTCAACTACGTCAAGCGGCTCAAGGACCTGTC
CAAAATGATGGCGCTGAAGTCGTCAGCTGCTTCTGCACAGGAGCCCCAGACGTCGGAGCA
ATCGTTCCGAAACTTTGCCTCCAAGCTGTCGTCCGGCAAGATTGGCAACCTCATTTCCAA
CGTCAAGTCGTATCTGCCACAAAACAAGGATATGCCCGTGACCCGAATTGTGTCCGGCAT
TGTGTCTCCTTCCGAGTCTGGCGACATTACCGACGACTATTTATATTTCGACCCGTCGGT
GCGTGGCTCCAGCACAAAGCCGCCCCGAAAACAGGCGTACAACGAGGCCATTGTGTTTGT
GGTTGGAGGTGCCAACTACGCTGAGTACGCCAATCTGATGGACTACGGTGTTAAGGCAGG
AAAAAAGGTGGTTTACGGAGGAACAGATGTGGTCAAACCCGATGTGTTTTTGGGAGAGCT
GGCCTCACTCACCAAGTAGGAGCGCAAGTAGGAGCCAGAGAGATTGGCTAGGGGTTGTAC
TTTATGCCACTCCTTTGCACGTAATAATGTAATAGAAAGGATATACTATTGG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D20416g_CDS-001

Protein length: 591 aa.
Product: Hydrophilic protein involved in ER/Golgi vesicle trafficking, putative

>YALI0D20416g_CDS-001 MNNSTLPESFRDKQIAAITRVLSGENGSANKSQAWKVLVFDKFGRDVISSVMRVNDLFQN
GVTIHMLLDSDRYAIDVPVVYFVRPTSDNLQKITRDLHSQLYESASVNFVSPLPRQLLET
FAADNVATASQITQVYDHYLNYVVSEANLFSLALPNIYSELASPKMDEDSLNAIVDQIVS
GLFSVVVTQGEIPIIRCPRGNAAEMVAQKLDSKLRDHVNNLKLTTNPLSRPVLMILDRNI
DLASMLQHSSNYMGLVHDVFESERGQIRIAKDNGTTESYDVAPSDFFWNQNSLLSFPEVA
ESMDNEVNKYKEEYSQITGGANINDMDTDASPTHLKKAISAIPKLTARKAVIDMHMNIAT
ALVDRIKKRQLDILFEAEDGLDKQALLPLLKNEELSGTDKLRAYICVYLSGTLSAAEQKE
YEGILSTQGVDMAALNYVKRLKDLSKMMALKSSAASAQEPQTSEQSFRNFASKLSSGKIG
NLISNVKSYLPQNKDMPVTRIVSGIVSPSESGDITDDYLYFDPSVRGSSTKPPRKQAYNE
AIVFVVGGANYAEYANLMDYGVKAGKKVVYGGTDVVKPDVFLGELASLTK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG