YALI0D20394g

Overview

Description weakly similar to uniprot|P26370 Saccharomyces cerevisiae YDL170w UGA3 transcriptional activator for GABA catabolic genes
Locus type CDS
Locus tag YALI0D20394g

Location

Species Yarrowia lipolytica Positions 2580826..2582717
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1892 (nuc.)
Previous locus YALI0D20372t Next locus YALI0D20416g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D20394g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D20394gYALI0D20394g_mRNA-001YALI0D20394g_CDS-001

Nucleotide sequence

 

>YALI0D20394g
ATGAGTGCCCCCAAGGACCCGGTGCCGGCGGCGCCTCCGGCCCAGCCGCCTCGAAAACGG
TCCCGAGACGGCTGCTATACGTGCCGCAAACGCAAGAAGCGCTGCGACGAAACACGGCCT
GTTTGTGAGTGCTGCAAACGGCTCGGAATCGTGTGCGTGTACCCAGCTCCTGGAACAGAG
TACAAGAACAAGAAACGAAAGGGTCTGCCAGACACGCACGAGCAGTTTGTGGTTGTTCCC
GTGGACCATGCGCCACCGCCTGTAGCGGGTTCTACAGATGTGGCCCCTGTCCCCATGCTT
GATTTCCATCCCTACAACTTCACCAACTACGTGGATCCCGCAGTCGATCACCCAATTGTG
GATATCACCGATCTCACAGAGGATGATATCAACCAGCTGGACGTTAATTCGTTGGTTCGA
ATTCCCTCTCCGTTTGAAATAGACGCAGACTTCAACTTGGAGTCTCTGGAGCCCTCTCTG
TTTGGAGGACTCAGCACCAAAGAGAACCAGATGCTGCAGTATTACGAGGAAAAGCTGTCG
CGAATGATATGTGTGGCGTCCGATCAAGACAACCACTTTGTTCAAATTTTTCTTCCCATG
GCCCATCATAATGCTGCTGTTCTACACAGCATTGTAGCGTGGTCTTCTTTCCATTCAGGC
AAGGCTGATCTTCAGGATACAGGGATGGCCGCGCTCGACAAGGCTGTGACCCTGACCAAG
AACCAGATCACAAACAATACTTTTGACCACTCCACAATCGCGGCCTTGCTGCTCTGCTGC
TCGGCTGAAGTGTGTAAGGGCGACCTACGCAACTGGAAAAAGTTTCTCAACATGTCGGCG
GCCATAATCCGCAACTATGGCGGTCTGTCCAAGTTTCTCAATGACAAAAATCTCCGCTGG
ATAGCCACAAACTTTGCCTATCATGACCTGGTCGCTAGTAGCTCTCACCATCGAGGACCT
CTTTTTGGTCGAGCAGAATACGAACAGCTGCTTCAGGGAGGTCAGGGTATCGACCCACTA
CTGGGAATCTGCAGAGAGCCGTACCAGATGATTGCCGAGGTGTCTCAATTGGCCAACGAA
TTGAGTGGCAATGAAGAAATGACTTCTTCGACTCTCACTACCGAAGCTAACATTCTGCAG
ACTGCCCAGCGTCTCGAGCACCAGATTCGTATTCTCACACCCAATCTGGCTGATACTATG
ACGCTCAGTGACGAGGAATGTACTTTGCATAAGCACCTGTTTGAAATTTACCAGCTGACT
GCCTTGATTCATCTCAAACGAACCATCTTCAAACTGCCTTCTACTTCTCTGGAGATGCGT
GTTTGGGGCCGCAAGTTGTCGTGTCTTTTGGACCTTGTGTTGGGCTCGGCTGTTGAGGGC
AATCTTTGCTTCCCCCTGTTCATCGCTGGTCTTAACATCCTGCCCTCTCAGAGACACGCG
TACCTGTCCAAGTTCAAGGAGTTTGCCACACGAAACAAGGCGAGAAACTTGCTGAATAGC
ATTTCAACGGTGGAAGAGTGCTGGAAGAGAGATGCAGGGGGAGAAAAGTATGTGGATTAC
TATGTGGTGTTGAAAGAGAAGGATTTGGATATCTGTTTGGCCTAGCACTGGAGCTAGGGG
CAGAGCTTGCCATTTGCCCAACCCCAGACCACAAGCACAAGTTGATCTTTGCTTAAGCCA
TCGCTGCTCCACATCCGTGACTACCATCTAGGGGTGGCGCTAAAAGACTACATCTAAGCA
CGACATCGAGAACGGTGGTTTGGACCGAATTAATGATGTTACGGAGAACAATGGTTGATA
TTGCTGTTACGGAGAACAATGGTTGATATTGCCCCCACCGTTGCTGTTGTTATGGCTATG
GCAAGACATTATAATGTATTTTTTATGATGTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D20394g_CDS-001

Protein length: 535 aa.
Product: Conserved hypothetical protein

>YALI0D20394g_CDS-001 MSAPKDPVPAAPPAQPPRKRSRDGCYTCRKRKKRCDETRPVCECCKRLGIVCVYPAPGTE
YKNKKRKGLPDTHEQFVVVPVDHAPPPVAGSTDVAPVPMLDFHPYNFTNYVDPAVDHPIV
DITDLTEDDINQLDVNSLVRIPSPFEIDADFNLESLEPSLFGGLSTKENQMLQYYEEKLS
RMICVASDQDNHFVQIFLPMAHHNAAVLHSIVAWSSFHSGKADLQDTGMAALDKAVTLTK
NQITNNTFDHSTIAALLLCCSAEVCKGDLRNWKKFLNMSAAIIRNYGGLSKFLNDKNLRW
IATNFAYHDLVASSSHHRGPLFGRAEYEQLLQGGQGIDPLLGICREPYQMIAEVSQLANE
LSGNEEMTSSTLTTEANILQTAQRLEHQIRILTPNLADTMTLSDEECTLHKHLFEIYQLT
ALIHLKRTIFKLPSTSLEMRVWGRKLSCLLDLVLGSAVEGNLCFPLFIAGLNILPSQRHA
YLSKFKEFATRNKARNLLNSISTVEECWKRDAGGEKYVDYYVVLKEKDLDICLA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG