YALI0D20328g

Overview

Description highly similar to uniprot|P39079 Saccharomyces cerevisiae YDR188w CCT6 component of chaperonin-containing T-complex (zeta subunit)
Locus type CDS
Locus tag YALI0D20328g

Location

Species Yarrowia lipolytica Positions 2573244..2575371
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 2128 (nuc.)
Previous locus YALI0D20306g Next locus YALI0D20350g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D20328g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D20328gYALI0D20328g_mRNA-001YALI0D20328g_CDS-001

Nucleotide sequence

 

>YALI0D20328g
ATGTCTGTGCAACTACTGAACCCCAAGGCCGAGTCCCTGCGACGGCAGCAGGCGCTTCAG
GTCAACATTGCCGCCGCAGAGGGTCTTCAGAGCGTTCTTTGCAGCAATCTGGGTCCCAAG
GGCACCATCAAAATGTGAGTATGGTGGCGATCAGTTGGTGTTAGACAAACATCAAGAAGG
AGTTCAAGACGTCCTAAGGGTAATGATGAGCATCTGTCCGTGTTATGTTGTACACGACGA
TGGTGCTGTTGATTATTGTGTTGCAATTGCACCTGTTTATGTAATTGGAACATGGTGGAA
GCCAGGATGTTATAACCACGACACAGGATTCATTTTGACGTGGTCACGACTTGATTGAGG
ACGTACCACGACAGGAGTTATCAAATGAACACAGATATGCCATATCACTGTTTCAGGACA
CGTCACAGTCTTATCACCAGAGTCATATCACCAAAGTCATATCACCAAAAGCACATCACG
AGAGTCATACAATACTAACCCAGGCTTGTTGATGGAGCAGGAGGAATCAAGCTCACCAAG
GACGGAAAGGTGCTTCTGTCCGAGATGCAGATCCAGAACCCCACCGCCGTACTGATTGCC
CGAGCCGCCACTGCACAGGACGACATTACCGGTGACGGTACGACATCGGTTGTCCTTTAC
GTTGGAGAGATGCTTCGACAGGCCGAGCGGTTCGTCACTGAGATGCATCCCCGAGTCATT
GCTGAGGGCTTTGAGATTGCTCGAAAGGAGGCCCTTTCCTTCCTCGACACCTTCAAGATC
AACAAGGCCGGCAGCGTCGACCGAGAGCTGCTTCTGGCGGTCGCTCGATCTTCCCTCGCC
ACCAAAGTGAACCCCACTCTAGTGGCGCGTCTGGCTCCCGTCGTCACCGATGCCGTTCTG
GCAGTTGGAGACGATCTGCACATGGTTGAGATCATGAAGCAGCAGCGACCCGACGACACT
CGGCTGATCCGAGGTCTGGTTCTGGATCATGGTCCCCGACACCCCGACATGCCCAAGAGA
GTCGAGAACGCGTTTGTGCTCACTCTCAACGTGTCTCTAGAGTACGAGAAGTCCGAGGTC
AACGCCGGCTTCTTCTACTCCACTGCTGAGGAGCGAGAGAAGCTGGTGCAGTCCGAGCGA
CAGTTTGTGGACGACAAGGTCAAGAAGATTGTCGAACTCAAGCGGGAAGTGTGTGCCAAC
GGCGAGGGCTTTGTTATTGTCAACCAGAAGGGTATTGATCCTCTGTCTCTGGACATTCTG
GCCAAGAACGGCATTTTTGCCCTGAGACGAGCAAAGCGACGAAACATGGAGCGTCTGCAG
CTCGTGTGTGGAGGAGAGGCCCAGAACTCGGTTGAGGATCTGCGTCCCGATATTCTGGGA
TGGGCCGGTCTGGTCTACGAGGAGACCATTGGCGAGGAGAAGTACACCTACATTGAGGAG
GTCAAGGACCCCCGGTCGGTGACCATTCTGATCCGAGCCCCCAACTCTCACAGCATTGCC
CAGACCTCCGATGCGGTGCGAGACGGTCTCCGAGCTGTGGCCAACTGCCGAACCGACCAG
GCTGTTGTTCCTGGTGCCGGCGCATTCCAGCTCGCTCTGCACCAGCATCTCATCAAGTTC
GCGCGAAGCACCAAGGGTAAGGCCAAGTACGGAATCACAGCCTTTGCCGAGGCCATGCTG
ATTATCCCCAAGACTCTGGCTTCTAACGCCGGCTACGACGCTCTTGACATGATTACCGAG
TGCCAGGACGAGATTGCCGAGGGCCATCTTGTGGGTTTGGATCTGACCACCGGCGAGCCC
ATGGACCCCACGGTTGAGGGTGTCTACGACTCGTTCCGGGTGATCCGAAACAGCATTGCC
AGTGCCACTGGTATTGCCACCAACCTGCTGCTGTGCGACGAGCTGCTCAAGGCTGGTCGA
TCTTCGTTGAAGCAGCAGTAAGGGGAGGTGTAGAGCATAAAATGAGGCCATAAGCGGTAT
GGGTTGGATACGAATGAATGTAATTGAATATAGACATGACAAGAGGAGGGAAGTTGAAGA
AGTAGTCCCTGCCTAACGTGTGCAGTACAAGTACGAGATAGCCACCGTCTATATTATTAT
TTTCTGCATAATACATTCATTAATTATA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D20328g_CDS-001

Protein length: 524 aa.
Product: Component of chaperonin-containing T-complex (zeta subunit), putative

>YALI0D20328g_CDS-001 MSVQLLNPKAESLRRQQALQVNIAAAEGLQSVLCSNLGPKGTIKMLVDGAGGIKLTKDGK
VLLSEMQIQNPTAVLIARAATAQDDITGDGTTSVVLYVGEMLRQAERFVTEMHPRVIAEG
FEIARKEALSFLDTFKINKAGSVDRELLLAVARSSLATKVNPTLVARLAPVVTDAVLAVG
DDLHMVEIMKQQRPDDTRLIRGLVLDHGPRHPDMPKRVENAFVLTLNVSLEYEKSEVNAG
FFYSTAEEREKLVQSERQFVDDKVKKIVELKREVCANGEGFVIVNQKGIDPLSLDILAKN
GIFALRRAKRRNMERLQLVCGGEAQNSVEDLRPDILGWAGLVYEETIGEEKYTYIEEVKD
PRSVTILIRAPNSHSIAQTSDAVRDGLRAVANCRTDQAVVPGAGAFQLALHQHLIKFARS
TKGKAKYGITAFAEAMLIIPKTLASNAGYDALDMITECQDEIAEGHLVGLDLTTGEPMDP
TVEGVYDSFRVIRNSIASATGIATNLLLCDELLKAGRSSLKQQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG