YALI0D19514g

Overview

Description similar to uniprot|P87149 Schizosaccharomyces pombe Putative mitochondrial RNA splicing protein
Locus type CDS
Locus tag YALI0D19514g

Location

Species Yarrowia lipolytica Positions 2469169..2470815
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1647 (nuc.)
Previous locus YALI0D19492g Next locus YALI0D19536g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D19514g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D19514gYALI0D19514g_mRNA-001YALI0D19514g_CDS-001

Nucleotide sequence

 

>YALI0D19514g
ATGCATATAAAAATATCGACCGATTTCGCCATTCAAAATCTCCATTGTACGACCATGATT
CGACCTTTGTTGAGGTTGTGCGGACAAAGGACGGCGGCGACACCGTTTGTGTCGTTTTTC
CGCCCGCCAAAAAAGCCGTTGTCCGGCATCTCGTTCGCTCGGCATTACTCTCCCACCAAA
AAACCACCTTCAGAGGTACCAACACCCACGCCAGGCAACTATCTGGTGCCCATCACGGGG
CCACCAGGAGACACGCCACGTGACACAGACCTGCTGATCAAGTCGCTCACCCACAAGTCG
CTGCTGCCCGAGAACAACCTGGTGCGGTGTACGGTATTCGACAGCGACGGAAACGTGACG
GTTGCTTCCGGCGAGTTCAAGCGGACAGAGCTGCTGAATAAGCACGGTTTGCTACCTCGA
GATTTGCGAAAGCTCGACACCGGAGTCAATTCCATTGTCCCTACGATTCTTGTGCGAGAC
AACTCGATTCTCATCAACTTGCTGCATATTCGGGCTCTGATCAAGGCGGACAAGGTGCTT
TTGTTCGACGTGTTTGGCAGCACGGACTCCAAAACCCAGTCGCTCTTCATGTACGACCTG
GGCCACAAGCTCAAAAAGTCCAATAAGACCATGGGATCTCTTCCTTACGAAATGCGGGCG
CTGGAGGCGATTTTCATTTCCGTGATTGCAGCTTTGGACGCTGAAATGAAGGTGCATACC
ACGGTCATTAACGGAATCCTGTCTGAGTTGGAGCAGGATATTGATCGAGAGAAGCTGCGA
CATTTGCTGATTCAATCGAAGAAGCTGAGTGCGTTTCTGCAGAAGGCTACATTGATTCGA
GATGTGATTGACGAGCTCCTCGACACAGACGAGGATCTGGCTGGTCTTTATCTGACCGAA
AAGAAGGCAGGTCATCCCCGAGCCATTGATGATCATTCCGAGGTGGAAATGTTGCTGGAA
ACCTACTACAAGCACTGTGACGAGATTGTTCAAACCGTGGGTAACCTCGTTTCTAACATC
CGAAACACAGAGGAGATTGTCAACATCATTCTGGACGCCAACCGAAACGCCCTGATGCAT
CTGGATCTCAAGTTCCAGATTGGAGCCCTAGGTCTGGCTGGAGGAACGTTCATTGCGTCG
TTGTACGGCATGAACTTGAAGAACTTCATCGAGGAGAGCTACTGGGGCTTTTTGGGTGTC
ACTGGCGTGGCGTCCCTGTTGACCGTATGGATCATTGCTCACTTTTTAAAGTCGCTGAGG
CAGGTTCAGAGAGTAACCATGACCAGCGACAAGAAGAAGGCGATGAAGAAGAAGGACACT
GTCGCGGAGAAGAGGAGGAACCACTTGAGGAATTGGCTGACCAAGTAATGCGTAGCCCAT
GGAGTGGCTCCGATGTGACAACTGTACACTTCAGGACGATAGACAGTGTGGTCATGGTCT
CAGTAGTAGAAAAATGGACCACCACCACACACCCCCATACTGCTGAAGCAGCAAAAGTAC
ATATGTATATATTTATTGACTGAATGGATTGGTGGAAGATGAGCTCTTGTTCTAATAAGG
GAAACCTGTTGTAATCAGCTAGTTAATACATATTTGTAGGTGATCTGAAGCCACACACTT
GTGCTCACCTCTGGGGTCGGCCACTGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D19514g_CDS-001

Protein length: 456 aa.
Product: RNA splicing protein, putative

>YALI0D19514g_CDS-001 MHIKISTDFAIQNLHCTTMIRPLLRLCGQRTAATPFVSFFRPPKKPLSGISFARHYSPTK
KPPSEVPTPTPGNYLVPITGPPGDTPRDTDLLIKSLTHKSLLPENNLVRCTVFDSDGNVT
VASGEFKRTELLNKHGLLPRDLRKLDTGVNSIVPTILVRDNSILINLLHIRALIKADKVL
LFDVFGSTDSKTQSLFMYDLGHKLKKSNKTMGSLPYEMRALEAIFISVIAALDAEMKVHT
TVINGILSELEQDIDREKLRHLLIQSKKLSAFLQKATLIRDVIDELLDTDEDLAGLYLTE
KKAGHPRAIDDHSEVEMLLETYYKHCDEIVQTVGNLVSNIRNTEEIVNIILDANRNALMH
LDLKFQIGALGLAGGTFIASLYGMNLKNFIEESYWGFLGVTGVASLLTVWIIAHFLKSLR
QVQRVTMTSDKKKAMKKKDTVAEKRRNHLRNWLTK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG