YALI0D19536g

Overview

Description weakly similar to uniprot|Q802V5 Brachydanio rerio Similar to TBP-interacting protein
Locus type CDS
Locus tag YALI0D19536g

Location

Species Yarrowia lipolytica Positions 2471059..2474695
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 3637 (nuc.)
Previous locus YALI0D19514g Next locus YALI0D19558g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D19536g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D19536gYALI0D19536g_mRNA-001YALI0D19536g_CDS-001

Nucleotide sequence

 

>YALI0D19536g
ATGACTGACTCTTCTCTGTTCATTCGCGAGCAATTGGAAAAGATCCAGTCGTTCGATGCG
GACCTACGGTTCATGGCCCTCAGTGACATGAGTTCGGTCGTGTCTGGACCTGACTTTGTG
TCTGTGGTCGCCACCGACTCTCGCCTGGTGGATCGAATGCTCACAGCTGTCATCGAAAAG
CTCAACGACCCGATATCCGAGGTCCAGAACCAATCAGTGCGGTGCCTGGAGGTGCTTATT
CGTCAGGTGAGCGAGACGCAGATCAACTTTGTCATCCAGACGCTCATTGACTCCGATAGC
CACTCTGTGGGCAAGAAGGCTGACGCTGGAATCGAAAGCAACATCACGTGCACGGCGCTC
AAGGCCATTGTCGGTAAGCTGGAGGCCTCTAGTCGAAACGCCCGCCTGCTGGCCCGTCTC
CTCATTCCCTGGATGACAAAGCCGGTGTCAGCCTCGTCAGTCGACATTGTGGACATTGGC
ATCGACTTTGTGCGACGGTTCGGCTCATCGCTCACTGCCGAGGAAATTGCCACTCTCAAA
ACGCACTTTGTGGGTCTCCTCAAGTCGCCTGAGCCAATGATCCAGAAACGAGCTGTGCTG
GGTCTGTCTGCCCTGGCCCGATACCTCTCTACACCTGAGTTCGACTCTCTCGTGCAGCAC
TGCATTGGCATGCTGCCAAAACAGCCCAAGATTGTGGTTACGCTGATTGGCAGCCTGGTA
AGCGGAGAGCCTGCCAAGTTCGCTCCCTACGCCCCCGCCACGTTTCCTCTGGTGTTCGAC
TGTCTGCAGCTGGACCTGGAGGAGGACCCCGATGAGGACAACTCGCAGCTGCTGGAGCTG
AGAGAAGTTACGCTGTACTCTCTGGAGGGCTTCTTGAAACTGCCCCAGGCGATTGTCACC
ACATTTGTGGAGAAGTTGGTGGAGGCATCTCGAAAATTCATTGTCTACGACCCTAACTTC
ATCGACGACGATGACGATGATGAGAACATGGACGAGGATGATGACGAGGATGAAGATGAC
GATGACGATGACGATGACGAGTTTGACTCGTACTCCGACGATGAGGACCAGTCCTGGAAG
CTGCGACGATATGCTGCTAAGCTAGCCGACTCAATTGTCAAGAACTGCGCCCAGACCATT
CTTTCTCTGGTCTACGCCTCTCTCTACCCCTGCATTCTCAAACGTCTCGCACAGGAGCGA
GAGACCACAGTCGTTGTGGCTCTTCTCGACACACTGGGAAGTATTGTGGTCTACAGCGGG
GTGAGTGGAGCTCGATCGCGGGTTAGACGTGGCTCCGACGCATCCATGCGGGTGGTGGAG
AACGACCCCATCGAGAAGCTCGATGCTACTCGTACAAAGCTCATCCAGGTGACCTCCAAG
TGGCTGACTCAACAGGCTACTGCTCCCCTGGCCGCTTTTGTGTACAGGTCGCTGGCTCAG
ACCCTCGAAGCACATGTGCTGGAGGTGATCCCAGTTCTCCATAATGCCGTTATTGACGGA
AAGCATGCCCAGACTACTCTTCTGGCTGATGCTTTGGAAATTTCGCAGATTGCAGTTTCG
AAAACTGACTGGTCGGACTTTACCGATCAGTACCTGGCCCAAATTCAGGATCTGATCCAG
GCCGGTCTTAAGGACACCTTTTTCAAGGTGCCTGTGGCTGCTATCGATCTTGTCATGTGT
CTGATGGGTGTGAATCCCGAGTTCAAGCCCCGGGACGCCATTGAGGCCCTCATCCTCGAC
TTTGCTTCTTCCACTGCGATTGATTCGGAGATTCGAGTGCGAGCAATTTCGTGCCTCGGC
AAGCTTAACGACGGTCAGGAGAGCCACGCCATTCTGCTCAAGTCCCTCGAAAATGAGACA
TTCCGACTTGCTGCTATCGGTGCAGTGCGAGACCTTGTTGAACGTGACCGTGTGACCCGA
GGCGAATTTGCGAGTCACGTGGTTTCACAGCTTGTCACCTTGTTGCGTCAGTCGCAGCGG
CTTTTGCGGCTGTCCGCCCTGGAGACTCTCAAGGAGATGAGTGCAAGCAGTGTGGTGGAC
ACTACTAGCGCAGAGCACGTGATCTCGTCGTTCTTGAACAATGGGTCTCGAGATATCGAC
GATCTGCAGCTCGTTGCTCTGGAAATTGACGTTATTGCTAACCTGTTCTCGCTGGTGTCT
TCCAACGACAAGCTAGTGCAGCCCGTGATTGAGCTCCCTCTGAACCACATCCATGTGACA
TCAGAGCTGTTGGCTGACTCCTTCGTCAACTTTTACGCACAAATCACATCCCTGCGGACC
GACCTGCGTCATGTCATCTACGAGCAGCTTTTGCGAGCCTGTGATTCCGGCCACAAGGGC
ATCTCCACACAAATTATTGGTTTTGTCTGTGCTGGTGACGACCAGCTGACTAACACCTAC
ATTTCGCGAGCCTCTGAGGCTGGTGGCGCCTCTTCTGAGTCCAGAGCTTCCGACCTGCTC
ATTCTGGGTTACATTGGTGCTGCCAAGGCCCTGCCAATCTCTCCCGAGCTGTTTGCTCCT
CATTTGACAGGATCCGATGAGGTAATTCGATATGCGTCTGCGGTTGCTCTGGGTAACTGT
GCTCGTGCCAATCCGAACTTTCTCGCATACACACTCTCTCTTCTCAACCAGGTCACCTAT
CTTGCTCTGGTTGCTCTGCGAGAGTACATCAAGTCGTCCACGTCTGACCCCGAGCCGCTG
TTTTCGCGGCTGTTTGACATTTCCGAAATGGACGACAACATCCAGAGCGTGGTAAGCGAG
TGTGTGGGTCGAATCTGTGTGCGGCATGAGGCGTATGTTGGTGACCTGAAGAAACGGCTG
GGAGACCCCAACTCTGTCACGCAAGCCATTGTTCTGTCTTCTCTGCGGTACATCTTCGGT
CAGGTGTCGTCTTCTGAGGACGTTCCCGAGGATCTGCATTCTGTGCCTCGAGATCTAGTA
ACTCTTGTGGACAATGTGAAGCAGGACAACACCGTGGAGCTGAGCTTGACGTGTCTGAAT
GCCATTCTGCACAATGCACCTACTCTGGCTCTCCCTATTCTGCCAGCTCTTGTGTCCACC
TTGATCACCCACACCTATGTGAACGCCGATCTCATTCGACAGGTGCAGATGGGTCCTTTC
AAGCTCAAGGTTGACGATGGACTGAGTCTCCGAAAGACCACCTACGACAGTGTTCTGTCT
CTGTTGTCCAACATTGACGCCAAATCTCTGACCGCTCATCTTCCCAGCCAGCAGCTGCTT
GCGCTGTTTGAGCGGCTTCTTGCTGGTCTTTCCGACGAACACAATATCCAGATTCTGTCG
CTGGTGTGCATTCCCAAGGCCGTGGCTGTGGACATCTCCCTTCTGGGGGCCCACATTGAC
GTTGGAGAAGGCACCAAGCCTGCTGTGAACGTGCTGACTACTACTCTCACCGGTCTGCTC
AACAAGGAGGTCAAGGAGAGTGCCATTAAGCAAGAGTTTGAGAAGAAGAACGAGATCCAG
CGAAACGTTCTGCGGTGTGTTGGTTCCATTACCACGTTGTTGGACGACGCTCCGGTCCAG
CCTCTTACGGATGTGGAGCTCAACTCGTGGACCGAGTTTGGTCATTTTGTCGAACGGTTC
AAGTAGATCTATGGCATTTATGTATTGTTTTACAGTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D19536g_CDS-001

Protein length: 1202 aa.
Product: Conserved hypothetical protein

>YALI0D19536g_CDS-001 MTDSSLFIREQLEKIQSFDADLRFMALSDMSSVVSGPDFVSVVATDSRLVDRMLTAVIEK
LNDPISEVQNQSVRCLEVLIRQVSETQINFVIQTLIDSDSHSVGKKADAGIESNITCTAL
KAIVGKLEASSRNARLLARLLIPWMTKPVSASSVDIVDIGIDFVRRFGSSLTAEEIATLK
THFVGLLKSPEPMIQKRAVLGLSALARYLSTPEFDSLVQHCIGMLPKQPKIVVTLIGSLV
SGEPAKFAPYAPATFPLVFDCLQLDLEEDPDEDNSQLLELREVTLYSLEGFLKLPQAIVT
TFVEKLVEASRKFIVYDPNFIDDDDDDENMDEDDDEDEDDDDDDDDEFDSYSDDEDQSWK
LRRYAAKLADSIVKNCAQTILSLVYASLYPCILKRLAQERETTVVVALLDTLGSIVVYSG
VSGARSRVRRGSDASMRVVENDPIEKLDATRTKLIQVTSKWLTQQATAPLAAFVYRSLAQ
TLEAHVLEVIPVLHNAVIDGKHAQTTLLADALEISQIAVSKTDWSDFTDQYLAQIQDLIQ
AGLKDTFFKVPVAAIDLVMCLMGVNPEFKPRDAIEALILDFASSTAIDSEIRVRAISCLG
KLNDGQESHAILLKSLENETFRLAAIGAVRDLVERDRVTRGEFASHVVSQLVTLLRQSQR
LLRLSALETLKEMSASSVVDTTSAEHVISSFLNNGSRDIDDLQLVALEIDVIANLFSLVS
SNDKLVQPVIELPLNHIHVTSELLADSFVNFYAQITSLRTDLRHVIYEQLLRACDSGHKG
ISTQIIGFVCAGDDQLTNTYISRASEAGGASSESRASDLLILGYIGAAKALPISPELFAP
HLTGSDEVIRYASAVALGNCARANPNFLAYTLSLLNQVTYLALVALREYIKSSTSDPEPL
FSRLFDISEMDDNIQSVVSECVGRICVRHEAYVGDLKKRLGDPNSVTQAIVLSSLRYIFG
QVSSSEDVPEDLHSVPRDLVTLVDNVKQDNTVELSLTCLNAILHNAPTLALPILPALVST
LITHTYVNADLIRQVQMGPFKLKVDDGLSLRKTTYDSVLSLLSNIDAKSLTAHLPSQQLL
ALFERLLAGLSDEHNIQILSLVCIPKAVAVDISLLGAHIDVGEGTKPAVNVLTTTLTGLL
NKEVKESAIKQEFEKKNEIQRNVLRCVGSITTLLDDAPVQPLTDVELNSWTEFGHFVERF
K*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG