YALI0D18634g

Overview

Description some similarities with uniprot|P32583 Saccharomyces cerevisiae SRP40 YKR092C Nucleolar, serine-rich protein with a role in preribosome assembly or transport
Locus type CDS
Locus tag YALI0D18634g

Location

Species Yarrowia lipolytica Positions 2334014..2337773
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 3760 (nuc.)
Previous locus YALI0D18612g Next locus YALI0D18656g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D18634g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D18634gYALI0D18634g_mRNA-001YALI0D18634g_CDS-001

Nucleotide sequence

 

>YALI0D18634g
CGAGACTCAACCACACCAAAGGCTCGCACCCAGCTCCGGCTACACGCATCTAATACACTG
TCGATACCTACGAGTAGGTGAGTATGAGAGGAGAGGAGGGAGGAGAGATGAGAGGGAGGG
TGGTGGATCACGTTACAATGGTTTGGTCACGTCCTGTGTGACAAGTGGGTGGCCGAGACG
GCAGATGGAGTCGTGGTCGGTACGAAATGTCTCCATTTGAGTAACGTCCATTCGTGTAAC
GGGTCTTTTGTGTTTACCACACCGGTTTCTGTGTCCACGCTAGCCTGTGTGTGGTGTGCA
TCCGGTTTGGATGTGCTTTGTGCTTTGGGTGCTTTGGATGTGTTTGGTTGTGCGATTTGG
CCGGTTTGTTGTGCGATTATTGCTGGCTTGTGTCTGTTACTTCTGGTTTGTTGTCCCTGG
CCTGTTACTGCTGTTACTGCTGGCTATGATGCCTGCTACTGTGGCCCGCCACTGTGGCCT
GCCATTATTATCGTTGTGTTTCGACTTTCGACTTCTGCTCTTATCCTGTTGTCTTCTCCA
CCAGCTTCACCATGTCTTCATTCGGCAATTTCTGATCCCTATCTCCTTCACCACTCCCTA
TCTTCCAGTGGATCGACCAACCCCAGCTCCAACTGTGCATTATCCGTGATCCAACACAGC
AGCCAAAAGTGGGGGGAGATACCGCGGGAACCTGTGCGCCGACGTCATGATGCGCGCAAC
TCCTCGTCTCTGTCCTACACCGTGGCAACACGCGCATCTTTGCCGCCATAATATCACTCT
ACCTGTTTGGCTGCCTATTTGGGTTGTTACGCGAGTGAGACATGACACGCGGCAATGGTG
TATGGTGGATGTGACGGTGGCCTTGCGCCGCTACAGTGACAGGGACCCAGCATCTCGAGC
CCGGACTAGTGGATCCGTCTGTTCTGTCTGGTGCCGCGTTCCGCCTTACTATCCACGACC
CTTGGTTTGTCACCCATCCCACCATCCCACCTAAAGCTTATTTTCGTTTTGCATTTCCTA
TTTGGGAAGATAAGCGTGGTAGCCAATGGGAGGCGGCGGGAACTTTGTGGGCGAGCCTAT
TTGTCTCTCCATCTGAGACGATGGACATGAGACACCGCAGCACGGTGAATGTGACACTAT
GTATTGTAGCAATGAAGAGGTGATGTCGAGGACAGGACGGGTGTTGGTGTGGGAGCGCGG
CGATGGTCGCTCGCGTGCCCGCCCCACAGTTCACACGTCCCGACCCCCACCATGCACTCC
ACTCATGCACTTTTTACATATTGTTACATTTGTGCCACATACATGTCATGTGGGCCATTA
TTCGTCCCAACCCCAGACTTCCTCTAGCGGCAGTACATGGCGGCGATGCAGGCTCACCAA
GCTCACCAACGGAAGAAGGTCTTTGAACACCAACACAGGAGGAGAAGCCAGAACACAACC
AGGGACAACAGGAGCAGGGAATTAGCATAGAAGCATAGCGACAGAGAGGCACAGACAGCG
TAGCGACACAGCCACAGACAGCACCAGGACCCATCTTCAGCATACACACACACACAACCT
CTACCACTAATTGCCCCCCCCCCCCCCCCCCACAACACCCATGACTAATGCCTAGAATGC
TCGGACGCCTGTTCAAATCTCGTCCCATCGAGGACTGGATGGACCACACTCACAACTCGC
CCCACGACGACCCGCCAGTGTCGTTTCTGGACGAGTCATACACGCGGCAACTGCTGTACG
GGCCGTCGGCAATCTCTTATCCGGAGATTGACCCCAACCGAGACGCGCGAGTGCTGCTGC
TATGCGACTCGCCGCTGACGGACTTTGTGCTCTACGACTCGCACAACCAGCCCCACGACA
AGTCGCCGTCGTTCAACCTACGAGCCATCCCTAACGATGGCCATTTCCAGGACTCCATCG
TCACCTTGAACCTGCTCAAGGACCTGGCGTTTGGATCCACGCCCATGCGGTTTGCGGGCA
TCGTCACCAAGCATCATCCCATTCCGCAGCCCCAGCATCTGGACCGAACCACCGTGGCCG
TCACCAAGCTGTTCAAGGTGGCCATCACTCCCAACGTGTCGTACCCTTGCGCACTGGTGG
TGTTCATTTCGGTCCCCAACAAACGGCGCAACCTGCTGCCAGCGCACTGGCAGCATCTCT
CGCGCGACATTGCCGAGCTCAGACTGTTGCTGTCCAATAAACTGAGCGACTTTCTGCCAA
CCTTCATGCGCGAGAAACGCCCTACTAACGAACATAGTTCGAGTCTGGCCCACGCTGCCA
GAGCCTACTTTTCCTCCGACGAAATCATCAAGTCCGCTGTCAACTGCTTCCGCATTTCGT
TTGTGTCCCGACTCCGTATCCCTCGCGTAGTCTGTGGCCAAAAGAAGGACGTGGCCGAGG
AGCTCAAATGGGCCCGGCAGCAGTACGACCCCGGCTTTGTCAACCAGATTCTCGCCGAGT
ACAGCCGTCTGCGTCACTCCAACGACGAGAGCACGCTGACTAACCGGGCCGTGGTAGTCT
CCTCAGACAAAATTGCCGCCCGACGCATTGTCTACCTTCTCGCCAGCACCATGCCCGGCA
TTGGTTCTTCTATGGAGAAGTGTGGCCAGTGCCATTTCCATCAGGTGCTAGAGACAGACC
CGTCTCTGGCGTCTACACAAGAGGACATTACTCTGACGACTGTAGCCCCTCCCATGGAGG
AGGTCCAGCCTGTTCGTCCTCCTTCCATCAACTCCGTCACCGAGGGTCTGACAGGCTGGG
AGATTCCCCAGAGAGCACGGGCTGTGTCCTCGAACCAGCAGTGTGTGATGCCTCACGTTG
TGCGGCCCTCGTTCTCCTCGTCTTCCCTGTCGTCATCTCTTTCGCATTCTCTGTCGCGGT
CCAAGAGCCAGAGCCAGGTGCCATTCTTCGATGGTCTCAAGCGGTCGCTGACGTCCCAGG
GCTCCATGACCTCGCTCTTTTCGCTGTGGAGTCCAACTGCCGGCAGTGGCGGCGCTAGCA
GCATCCCCACCAGCAACAATGCTGCCTACCTTCGGTCTCTGTCGCACTCGCAAGAGTCGC
CGACGTCAAAATTTTCGTCGTCGTTTGCGCGGTCGTCGGTGACGTCTCTGGATGACTTTT
CCGAGCATCTAGACCTCGACAGCGAGCTGGAGGAGCGCACTCCCACAGCTGTGATTTGTC
ATGAGCATAGTGAGGTCAAGTTTTCGGTTGAGACCAGTCAGACAGACGATTCCGTTATCG
ACGTGAACTTTTCCAACGTCGAGGCGCTCTTCTGGGATAAGGACCAGCACGAGACTTCGA
TGGAATGTGAGAAGGACGACAGCGAGTCTAGTTTGGATCCCGACATGGTGTCCATTGACA
AGACTTCGTTCAAAGTGCTTCCTCCGGTGGCCGGCTACCTGCCCGATTTGCATCCGGATT
TCAGTGTTCAGGCGGTTCCCTACTGCCGAGGATTTGAGGAGAAACTCAAGTCTGCGATGC
TGCGAGACGATCTTCCTGGCGAGACCCTGATTGTGGACCTGGACAATGTTGTGTGTCACC
AACTGTGGCTGGTGCGCAGTGAGGACGAGACGGAAATGTGGAAGTTTGGCAACAAGAAGC
TTGGTCCTGGAAAGCCTGATTTCGACTTGACCAGCGTGTTTGAGGGTGCCGACGAGGACG
ACAGTGATATTGTGTTGGAATAATTTGCATGAGCTCCCGGCTCGATTATTTATGTATTTA
TAATTATTTATAGCTGTTTTCAGCAGTGTTTATTGAGTGG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D18634g_CDS-001

Protein length: 689 aa.
Product: Conserved hypothetical protein

>YALI0D18634g_CDS-001 MLGRLFKSRPIEDWMDHTHNSPHDDPPVSFLDESYTRQLLYGPSAISYPEIDPNRDARVL
LLCDSPLTDFVLYDSHNQPHDKSPSFNLRAIPNDGHFQDSIVTLNLLKDLAFGSTPMRFA
GIVTKHHPIPQPQHLDRTTVAVTKLFKVAITPNVSYPCALVVFISVPNKRRNLLPAHWQH
LSRDIAELRLLLSNKLSDFLPTFMREKRPTNEHSSSLAHAARAYFSSDEIIKSAVNCFRI
SFVSRLRIPRVVCGQKKDVAEELKWARQQYDPGFVNQILAEYSRLRHSNDESTLTNRAVV
VSSDKIAARRIVYLLASTMPGIGSSMEKCGQCHFHQVLETDPSLASTQEDITLTTVAPPM
EEVQPVRPPSINSVTEGLTGWEIPQRARAVSSNQQCVMPHVVRPSFSSSSLSSSLSHSLS
RSKSQSQVPFFDGLKRSLTSQGSMTSLFSLWSPTAGSGGASSIPTSNNAAYLRSLSHSQE
SPTSKFSSSFARSSVTSLDDFSEHLDLDSELEERTPTAVICHEHSEVKFSVETSQTDDSV
IDVNFSNVEALFWDKDQHETSMECEKDDSESSLDPDMVSIDKTSFKVLPPVAGYLPDLHP
DFSVQAVPYCRGFEEKLKSAMLRDDLPGETLIVDLDNVVCHQLWLVRSEDETEMWKFGNK
KLGPGKPDFDLTSVFEGADEDDSDIVLE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG