YALI0D18612g

Overview

Description weakly similar to uniprot|P25298 Saccharomyces cerevisiae YMR061w RNA14 component of pre-mRNA 3
Locus type CDS
Locus tag YALI0D18612g

Location

Species Yarrowia lipolytica Positions 2329402..2331986
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 2585 (nuc.)
Previous locus YALI0D18590g Next locus YALI0D18634g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D18612g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D18612gYALI0D18612g_mRNA-001YALI0D18612g_CDS-001

Nucleotide sequence

 

>YALI0D18612g
ATGTCTGACGATTACGATCCTACGGCCGTGGCGTTCAAGCCGGGCGACATGGAGACGGAT
ATGAACACTGGCGAGCCGCTGGCGCTCGAGGCCGAGGCTGCTGCCAAGGACCCGGCACAT
AATGAAGAAAGTGGTGAAGATACAAACGCAAACGTCGAGTCGGGGACCCTGGTGCACCAG
GGCGACGAACCTGAATCGATTGACAAGGAGGACAAGGTGGAGGATGGACCAGACACAAAG
AGCGATGGAGGAGTGTTAGACGAGCCCAAGGATGGGGAGCAGAGGGATGATGAGAAAAAG
GAAGAACACAAGCCTGAGAACCCGTCTGAAGAAGTCGCAGAAGATGACGACTATGTGCCT
GCAGCGGTGAGTGAGCCTGTGGAGGAGGACTCGGCTGGAGGAGGGTCGGTTGGAGGAACC
GGAATCCCTGATGGAGCTATCAGTTCTTTGGCTGCAAGCACTACCATCCCCCCTCCCAGC
GACCCCAACCAAGTGGGAGGAGGAGCCAGCTCCACCAGCAACAACAACAACAGCGGCCCA
GATAACAACAAGCGAAAACGACTGGCCACAGACACAATCGGCATTCTTGAGGACCGCATC
GCCGCCAACCCCCGAGACATGCCTGCGTGGCTGGATCTGATTTCGACGATTGTGCGCAAG
GAGAAGCTGGACGAGTCGCGGGACATTTACGAGCGGTTTCTGGCTCTGTACCCGCTGTCG
GCCGAGATTTGGATCGAGTACATCACGCTGGAAATGGACAATGGCGAGTTCAAGCGCCTG
GAGCAGCTGTTTGGGCGGTGTCTGACCCGCCTGCCCAACCTCAAGCTGTGGAACATCTAC
CTGACTTATGTGCGGCGAGTCAACGTGCTGTCTTCCGAGTCGGACAAAATCACTGAAGCC
CGAACAAACATCATCAAGGCCTTTGAGTTTTACCTTGACCATGTCGGCATTGATCGAGAG
AGTGGCAATGTGTGGTTTGAGTACCTGGACTTCATCAAATCCAAGCCGGCTACAACTACC
TGGGAGGAGCAGCAGAAGAATGACCTCACGCGCAAAATATACCGAAAGGCGATTGGCATC
CCGCTCAACAACCTGTCGATTCTGTGGACCGCCTACACCAACTTTGAGTACTCGCTCAAC
AAGGCCACAGCTCGAAAGTTCATCAATGAAAAGTCTGGCAGCTGCCAAAACGCCCGACAG
TGCCAGACGGTGCTGGAGAACCTGATGCGGGGTCTGGACCGAAGCAGTGTGCCCAAGTCC
GGGCCCAGAGACGAGTTCCAGGTGCGAGCTTGGAAGAAATGGATCGACTGGGAGAAGAGC
AACCCTCTGGGTACCGACAACAAGGCCGAAACCAACAAGCGGCTGCTGTACTGCCTCAAA
CAGGCCGTTATGAGCTTGCAGTTTGTGCCCGAGATTTGGTTTCTGGCTGCTGAGTACTGT
TTTGACGACCCTCTGCTCAAGACCGAGGCTCTGCAGTTTCTCAAGGATGGCCTCTCTCTC
AACCCCAACTCATCGCTGCTGGCTTTCCGGCTCGCCGAGTACTACGAGCGGGAAGCCGAT
GCTGAAAAGATGCGAACCATTTACGATGAGCATATTGAGTCTCTGGGCAAGGAGAGACAG
GCTCTAATTGAAGCTCAGGGCGATCCGGAGGCCGAGCCTACTGCTGAGATCATCAAGCTC
AACACCCAGATCTCCATTGCGTACTCGGTGTGCATGAAGGCCGTGAAACGGTTTGAGGGT
ATCAAGCCAGGCCGAATGGTGTTCAAAAAGGCCAGAAACACTGGGTTTGCCACCTACCAC
ATTTACGTCGCGTCTGCGCTGATGGAGTTTCACCACAACAAGAACCCCACGGTTGCCACC
AACGTGTTTGAGCTTGGTCTCAAGTACTGCGGTTCCAATGCAGCCTACGTTCAGCATTAT
CTCGACTTTCTCATTTCTCTGCACGACGACACCAACGCACGGGCTCTGTTTGAGAAAACC
ATTCCTCTTCTAGGTCCGTCGGACGCTGCTTCGCTCATCAAGTCGATGATCAAGTTTGAG
TCTGACTTTGGCGAGATCACCAGTGTGGTCAAGCTGCAGGACCGTCTGCGGCAGCTCAAC
CCCGACACGTCGCCCATCACCATCATTGCCGACCGGTTCGCTACCTCGGACTTTGATGTC
ATTCGACAATGCGACATGCTGCAAAAGCCCAAGTCGCGAACCGACGAAGATTCTGACTCG
GAGCGGCCCAGCAAGAGAGCTCGCCGAACCTCTCACGGAAACGACCAGGGCGACAAGATG
GAACCTTTCAACCTGCCTCAGAAGATTGATGCTTTGCTAAGGCAGCTTCCCAACTCTTCT
GACTATGGAGAGGCTACGTTTGATCCTCAGCGGCTGGTGGATTTGTTTAGGGACGTGAGA
ATTCCGGACGGACTTCTTTAGCGGGTGGATGCTGGTGAGCACAAGGACCCACAAAGAGCA
AAAGGGGGGGACTGAAGAACTCGAGTCTTGTGCTTCAGCAAACAATGTCTGGATTGTTAT
ATGGTTGTATGAGGGAGCGAGGGGTAGGCATATAATTGTCAATGTATTGTAGAGTAAGTA
CCATA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D18612g_CDS-001

Protein length: 807 aa.
Product: Conserved hypothetical protein

>YALI0D18612g_CDS-001 MSDDYDPTAVAFKPGDMETDMNTGEPLALEAEAAAKDPAHNEESGEDTNANVESGTLVHQ
GDEPESIDKEDKVEDGPDTKSDGGVLDEPKDGEQRDDEKKEEHKPENPSEEVAEDDDYVP
AAVSEPVEEDSAGGGSVGGTGIPDGAISSLAASTTIPPPSDPNQVGGGASSTSNNNNSGP
DNNKRKRLATDTIGILEDRIAANPRDMPAWLDLISTIVRKEKLDESRDIYERFLALYPLS
AEIWIEYITLEMDNGEFKRLEQLFGRCLTRLPNLKLWNIYLTYVRRVNVLSSESDKITEA
RTNIIKAFEFYLDHVGIDRESGNVWFEYLDFIKSKPATTTWEEQQKNDLTRKIYRKAIGI
PLNNLSILWTAYTNFEYSLNKATARKFINEKSGSCQNARQCQTVLENLMRGLDRSSVPKS
GPRDEFQVRAWKKWIDWEKSNPLGTDNKAETNKRLLYCLKQAVMSLQFVPEIWFLAAEYC
FDDPLLKTEALQFLKDGLSLNPNSSLLAFRLAEYYEREADAEKMRTIYDEHIESLGKERQ
ALIEAQGDPEAEPTAEIIKLNTQISIAYSVCMKAVKRFEGIKPGRMVFKKARNTGFATYH
IYVASALMEFHHNKNPTVATNVFELGLKYCGSNAAYVQHYLDFLISLHDDTNARALFEKT
IPLLGPSDAASLIKSMIKFESDFGEITSVVKLQDRLRQLNPDTSPITIIADRFATSDFDV
IRQCDMLQKPKSRTDEDSDSERPSKRARRTSHGNDQGDKMEPFNLPQKIDALLRQLPNSS
DYGEATFDPQRLVDLFRDVRIPDGLL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG