YALI0D18216g

Overview

Description similar to uniprot|P07884 Saccharomyces cerevisiae YOR274w MOD5 tRNA isopentenyltransferase, pseudogene
Locus type CDS
Locus tag YALI0D18216g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 2278764..2280091
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1328 (nuc.)
Previous locus YALI0D18194g Next locus YALI0D18249g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D18216g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D18216gYALI0D18216g_mRNA-001YALI0D18216g_CDS-001

Nucleotide sequence

 

>YALI0D18216g
ATGAAACTACCACTAATAGCTATCGTAGGAACCACGGGAGTGGGCAAGTCCAACTTCTCG
ATCGAACTAGCTAAAGCGATATCCGGAGAAATCATCAATGGCGATTCCATGCAGGTTTAC
CAAGGACTAAACCAGATTACTAATAAACACCCGATGGAAGAACGACAGGGAGTCCCGCAC
CATCTTCTGGGCCACGTGAGCTGGAAGGAGGAGTACGGAGTGCACCGATTCGAGGACGAG
GTGCTGACTAAGATCAGGGAGATCAGAGCTCGGGGAAAAGTGCCCATTTTGGTGGGAGGA
ACCCATTACTACATTCAGAGCGTGCTGTTCAGGGAGAACATTGTCAAGATTGAGGAGAAA
CGGGAATTGAGCCAGCGGGAACTGGAGGTTCTCGATTCCCGTGATCTGTGTTTGTCTGAA
TTGCGCAAATTGGATCCCCAGATTGCCCAAAAGTTTCACCCCAATGATACCCGTCGAATT
CGACGCATGCTGGAAATCTGCCTTCTGACAGGAGAGAAGCCCAGCGAGGTGTTTAGCCAG
CAGAATAAAACCAAGTCGCGCGACCGCACGTTGGTATTCTGGCTCTTTTCCGACCAGCAA
GTTCTCAACGATCGTCTTGACAAACGGGTTGATGGTATGTTGAGTAACGGTTTATTGGAG
GAGATCAAGGACATGTACCAGATCTATCGAGAGGGTGATATCGATATTGAGCGAGGAGTT
TGGCAGGTTATTGGATTCAAACAGTTTCTGCCGTTTTTGGAAGGTAAAGAAGGGATTGAA
ACCGGACTCCAAGTGATGAAAAATGACACTCGACGATACAGCAAGCAGCAGATTGGATGG
ATCAGTAAAAAGTTGCTGAATCAGGTCCGGGGGGTCCAGTGAGACCTTTTGTGTGCTTGA
CGCCACTGACTTGAGTGTCTGGAAGCAGACCATTGACCATGGAGTGGGCGTGGCTCGGGA
TTGGCTGGAGGGTAAAGATGTGGAGGACAAGAGACTTGTTTCCAGTAAACGAGAGGAGCT
GCACAAGCTGGTGGCACGTGAGAAGACGGAGTTTGGGGCACGTGACGTGGAGTACGTGCA
ATTCGAGTGTCCTACTTGTGTGGACAAGGATGGGCAGCATGTTGTTTCTGTGGGTAAGGA
GGCACTGGAGATTCATCTCAAGAGCAGGAGACATGTCAAGACTCTTCAGGCCATTAAGAA
GAGAGAGCACAATATGAAGATGAAGGAGGAGATGGAGAAAAGAAGAAAGGTTGCCGAGGG
CGATTCTGAGGAGGGAAAGGAAACTAAACCAGTAGCATAGAGCATTTAATGGATATGTTC
TGTAAGCC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D18216g_CDS-001

Protein length: 432 aa.
Product: Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase, putative

>YALI0D18216g_CDS-001 MKLPLIAIVGTTGVGKSNFSIELAKAISGEIINGDSMQVYQGLNQITNKHPMEERQGVPH
HLLGHVSWKEEYGVHRFEDEVLTKIREIRARGKVPILVGGTHYYIQSVLFRENIVKIEEK
RELSQRELEVLDSRDLCLSELRKLDPQIAQKFHPNDTRRIRRMLEICLLTGEKPSEVFSQ
QNKTKSRDRTLVFWLFSDQQVLNDRLDKRVDGMLSNGLLEEIKDMYQIYREGDIDIERGV
WQVIGFKQFLPFLEGKEGIETGLQVMKNDTRRYSKQQIGWISKKLLNQVGGSSETFCVLD
ATDLSVWKQTIDHGVGVARDWLEGKDVEDKRLVSSKREELHKLVAREKTEFGARDVEYVQ
FECPTCVDKDGQHVVSVGKEALEIHLKSRRHVKTLQAIKKREHNMKMKEEMEKRRKVAEG
DSEEGKETKPVA


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG