YALI0D17820g

Overview

Description hypothetical protein conserved in the Yarrowia clade
Locus type CDS
Locus tag YALI0D17820g

Location

Species Yarrowia lipolytica Positions 2203609..2206944
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 3336 (nuc.)
Previous locus YALI0D17798g Next locus YALI0D17842g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D17820g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D17820gYALI0D17820g_mRNA-001YALI0D17820g_CDS-001

Nucleotide sequence

 

>YALI0D17820g
ATGAGCCCAAAAGATATAAAGCCAGTGGGTCTGGGGATCGCTCTACCCATACAAGACGGT
AAGATGGACTGGACTGATCCCAGCTCCGGCTACAACTTCATCCAAGGTGACTTTTTGGAG
GTGTCAAACACCATCGCCCCCGATGCCATCGGTCGCGGTGCACTTGACATCACAGCTATT
CCGACTGAGAACGATCTTACTGTTAAGCTGTTTGACGAGTTTTGCCATGACGACATGTAC
GAATCGGCGATTGATTCCGCTTCGCACAACTCCGTCAACTCAACCTCGAATCCAACATTT
GGGTCCCCCTCGTTGGCGCCGATTGATTCAGCCCCCCATTCAGCCAACGTTACGCCTCAG
AGCGTATTGGCTCAGCATGGACTGATGGGTGCTCCGGCTGTTCCTGAGCAGCAGCAGTCA
AACGTGCACATCCAGCAACAATACCAGACCCAGGTCCATACTGAGGATCACCAGCCCCAG
CAAGAGCAGGCCCAGACTCCGTCCTTGGCTCACCCTCAGCGGCAACCCCATTTCCAGAAC
CTGCAAAGTCAGCTAGATCATGAACAGCAGACCCAGCATCAATCTGACGCCGAGCACCAA
ACCCACCACCAGCAAACCCACCACCAGCAAACCCACCACCAACAGCAGCTTCAAGTCGAG
TTGGAGAATCAGACTACGAATGAGCCTCCGGTTGGTCACTATGCTCAGCAACTGTACTCT
GCGGACCATCAACTGCAGCTTCAGGCTCACCCGTCTGGGCATGCTGCTGTCCAGTCTCAG
CTGCAAGTTCGCCCCCAGACTTCTCTGTTTCCCAACCATGATCATGCTGAGTTTGTTCAA
TCCCGGTCTCGGGCTCAGCTTCAAGATTCTCAGCTGGTTCATCTTCAGCGACCAGGCCAG
ACTCAGTTTCATCATCATCCCACTGCTCAGTCTCATATTCAAACTCAGAATCACTTGAAC
CACGGCGATCCTCCTCAGACAATGTCTGGTCAGATTCATTTTGATCGCCAGACTCAGTTG
AAACTGGAGTTCGAGCCACATCCACATCCTCCTGTTCAGTCTCATTCTGGAGTTGGCATG
CAATCTCATGCTGAGACTTTTCAAAATGGTGCTGCTCAACCTCAACCGAGTGCTCTGCAG
ACTGGCTCTGCGCAGCCTTCTCAGGCTCAGAACCAACATCCTTCTGCCGTATCGGCGCAG
TCGACACCCGAAACTGTCCCCTCGCCCTGTCTGAACTCTCCGCCCGTGCATGCAAATGAT
ACCTCTCCTGGAACCGTTTCTGCCGGAAAGCAGTCTACCACTCCTCAGTTCCCTGCTCAG
TATAGCCAGAGTCTTGATCAGAGTAGTAGTGAGTCTCAGCTGCAACGGCAGCAACTGGTT
GTCCAGAATTCGTCTCTCATTTACAACCAGCAGCTTCTGAACTCACCATTCCAAGTTCCC
CAACAAGCACAATTCCAACCCCAGCTCGGAGAACCGTCGCAGGAGCTGACCATGGCTCAG
TTTCCTGCTCAACAAGTGATGTCTCCGGTAACTCGCACGCTTCAGTTTCACGTGGGTGCT
GCTCCTTCTAACGCGACTCTGTCTAACCAACCATCACCTAACCAGTTCCAGATGATTGTC
GCTCCGGCAGCTCCCATCGGCTTTTCCTCTCGTCCTTGGAGAACAGACCCGTTTCAACGA
TGGTATTCTGCACGGATCCAGATGCCGTTGGAACCTGAGACGGCAGAGGATGTGAACATC
TGCAACCGGCTTGAGCGAGCGGTTGCCAAGGTCAAGATCTGCGAGGACCTGCAGTACTCG
ACCGTCAGGGCGTGGGATATCAACCAACCTCTGACGCTCGGACAGTACGACGCCATGAAC
AAGTGTGAAGGTGAAATCGTCGAGTTGTCACACCATCGACTTGACGAGCGAGAGCAGCGA
GAGAAGGATGATGAGAAGCTGGCTCTGGAGTGTTCCAGGAACGAGTTACTGGCTCTGCAT
CTTCGAAACCAACTGATGCAGTTCAAACTCATGTTTCATGGCCACCCTCATTTCCACGCG
CTCCGAGTGTGTAACGAAACCTGTCTTACGCGATACCCTGCATATCCCCCTCCTGCCAAT
GCTGTGGTTGGAGTAGCTGGAAGTAATGCTTCGACCGACAATATGAAGCTGTCACCGCCA
ACACTCCTAGAACCGCTCTCACCACAGGAGCTGCGGCGGCTAGAACAGCTCGAGGAAGAA
AACGAAAACGACTACTCCAACTTTCCTTGGGCCCATAGATTGGTGAGCTTGACACAGCTT
GAGCGATGGAAGCAACGAACGCACATTGTCGGTGAGCTCTTCTACTCGTCCCGACCAATA
CACGCGAGGCAGATACGCAACATTGTCAGGTTTCTGGAAGATGACTTTATGCACATCAAG
GTGACCTCTCTTCGCGCCCGCGAGGTACTCCGGGAGCACTTCAAGAACCCCTACGTCACT
CTGTTTGACCACCTCCAGCGTCAGAGGGTACCTGAACAGAGGAATCCCCACATCTACCAG
TACGTTGAGTCGATCATGGACAATGTCTACCTGTCGGCCTACTACCGAGTGGAGGCTAAG
AAGGGCACACGGAAGCTGGATGGCCCAGGAGGCGAATACATTCCAGACGAGAAGGATATT
GGAGAGCGGTACTGTGGGATATGTGACAAGTGGTTCAAGACGCGAAACCACAATTGGGCG
TCCCATATGACATCTACTCACGGTGTCTGCTCTGCAACCAAGTCCATCTACCCTTTCCCT
CTAGCTGTCATTCTCGGCATACCTTCTACGACCCAGAAGGAGGATGGGCTTGTGGTCCAC
CAGAACATCATCTTCGAGACTAACTCCGACGGCGATCTTCAGATCCAGAACGAATCCCAG
CCACGTCACCATCTGCTGCCCGACAAGGACATCAAGCTCAGTGGTCTGTGTCCCATTTGC
TGCCACTATGTTCCGCTCTATTGCAAGCGAGGTGCCACTGTCTGGACCACCTGGTTCCGA
CACCAGGACAAGCATATCCGGGAGTTCAACCAGGAACGAAACGGAGGTGTGGCTGTCAAC
CACAACAATCCACGAAACAACAAGACACGAAAAGAGCAGATTTGCAAGGAGCGGATGCAG
GCCTGGAGACAGCAACAGGAGGAACGGATGAGCAAGCGACTCAAAAACGACGATATGGCG
TTCCTGGAGGAGGGTGTGGTTGTCGATAATGTTCAAAATGGCAGCTGGCTCAATGAGGAG
TTTGCCATGACCCAGGCCGAGGTCACGTTGACGTACCAGATGGGGTATCAGGAGTCTGAG
CCCGGTATTGGGAGTGGCATTCAGGACTTTTTTTAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D17820g_CDS-001

Protein length: 1112 aa.
Product: Hypothetical protein conserved in the Yarrowia clade

>YALI0D17820g_CDS-001 MSPKDIKPVGLGIALPIQDGKMDWTDPSSGYNFIQGDFLEVSNTIAPDAIGRGALDITAI
PTENDLTVKLFDEFCHDDMYESAIDSASHNSVNSTSNPTFGSPSLAPIDSAPHSANVTPQ
SVLAQHGLMGAPAVPEQQQSNVHIQQQYQTQVHTEDHQPQQEQAQTPSLAHPQRQPHFQN
LQSQLDHEQQTQHQSDAEHQTHHQQTHHQQTHHQQQLQVELENQTTNEPPVGHYAQQLYS
ADHQLQLQAHPSGHAAVQSQLQVRPQTSLFPNHDHAEFVQSRSRAQLQDSQLVHLQRPGQ
TQFHHHPTAQSHIQTQNHLNHGDPPQTMSGQIHFDRQTQLKLEFEPHPHPPVQSHSGVGM
QSHAETFQNGAAQPQPSALQTGSAQPSQAQNQHPSAVSAQSTPETVPSPCLNSPPVHAND
TSPGTVSAGKQSTTPQFPAQYSQSLDQSSSESQLQRQQLVVQNSSLIYNQQLLNSPFQVP
QQAQFQPQLGEPSQELTMAQFPAQQVMSPVTRTLQFHVGAAPSNATLSNQPSPNQFQMIV
APAAPIGFSSRPWRTDPFQRWYSARIQMPLEPETAEDVNICNRLERAVAKVKICEDLQYS
TVRAWDINQPLTLGQYDAMNKCEGEIVELSHHRLDEREQREKDDEKLALECSRNELLALH
LRNQLMQFKLMFHGHPHFHALRVCNETCLTRYPAYPPPANAVVGVAGSNASTDNMKLSPP
TLLEPLSPQELRRLEQLEEENENDYSNFPWAHRLVSLTQLERWKQRTHIVGELFYSSRPI
HARQIRNIVRFLEDDFMHIKVTSLRAREVLREHFKNPYVTLFDHLQRQRVPEQRNPHIYQ
YVESIMDNVYLSAYYRVEAKKGTRKLDGPGGEYIPDEKDIGERYCGICDKWFKTRNHNWA
SHMTSTHGVCSATKSIYPFPLAVILGIPSTTQKEDGLVVHQNIIFETNSDGDLQIQNESQ
PRHHLLPDKDIKLSGLCPICCHYVPLYCKRGATVWTTWFRHQDKHIREFNQERNGGVAVN
HNNPRNNKTRKEQICKERMQAWRQQQEERMSKRLKNDDMAFLEEGVVVDNVQNGSWLNEE
FAMTQAEVTLTYQMGYQESEPGIGSGIQDFF*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG