YALI0D16984g

Overview

Description some similarities with uniprot|Q9H2G0 Homo sapiens CTCL tumor antigen se37-2
Locus type CDS
Locus tag YALI0D16984g

Location

Species Yarrowia lipolytica Positions 2094876..2097260
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2385 (nuc.)
Previous locus YALI0D16962g Next locus YALI0D17006g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D16984g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D16984gYALI0D16984g_mRNA-001YALI0D16984g_CDS-001

Nucleotide sequence

 

>YALI0D16984g
ATGGACTTCAAGGCCATCCACAAAGGCTACGAGTGCCAGATCTCCAACGGATGCGGGTCG
GTCACGTGCTCTAAACCATACTGTCTGAGTAATCCAAGAGGATACCAGTCGAGAAACGGA
CGCTTCACAAAGGCAGCAGCACGCCAACATGCCAGTAATCTGGTCATGCTGCGAGGAGAG
GACGGACTATGTGTTTCCCTTGATCAGCTCAAGTCATGTGATCAAACAAGAGAGGAGGAC
GAAGAGTCAAACAACGTGGACGATGACAATGGCACCGACACCACCAAACAAGAGCATCCG
ACAAAGTCACGAGCATCTGTCAGCCAACAACACGAGTCGGTATCACTATCACAGAGCCCA
GCCGATCCCAATGCATCACGTGACTACCCCAAGACGACGCTGTCGCACTCCATGCTCAAG
ACCACTGTATACAATGTTCTTCCGAGCTTTGAGGATGGCTCTTGGAGTGTCATTCTGGAC
GCCAAAGACGAATCTACAGGAGACAGGGCCATCGACAAGGCACTTGATGAGACCGCACCT
CCTGGCACCCATGATACAACTCTTCAGAGCATGACTACACCTACCAACTTTCTCATTCAT
CTCCTGAAGAACCCAGGTTGCAGAGATAATCACACGGCGGCTTTACCTTCGCGCAAACCC
GTGTTTCCGCTGAATCACTATCTCTTTGCATTCCACTCTCGAGTCCAGTTTCTCTATGGG
CTCCAGTTCATGGGAGATGCGGTGTATCACGAACGTGAACAGCTTTGGGGGGATATTGCA
CAAGATGTAGTCAATGACGTGGTTGGGTTTGTCAAGTCGGGAAACGTCGAGTCTGCCAAG
ATGGCGCTTGTTGGTAGCTTGCTAGGGGGTAGTGGTTTTGAGGTAGATGAAGTGGACACT
GCGATGTGTGACAAAGGTAAGGGTGCTGAAGAGGCCAAGGAAAAGCTGAACGCTGATTCA
CACCCCGTTCTCATTACTCGGCATAATCCTAGCGTTTCTGTGGCCCGGGTTCCCAATCTC
CACAAGGTGAAGCAATATGTAGGTCTTATCAACACTCCCTTGACCTCAAGCTTCTCTTCA
ATCTCTTCCGATTACGACTCTCCCATCGTTCCCCGCCATTCGAGCGATCTATACCAGATT
GTCCAGAATCGAGCCGGTGTGTCACATGACCAATCTCGATTATACAGCTTCCGACGCATG
TACAGTCTATACAACGGGCCGGAGAATCTCGTCCGACGTTCGGTGTACCTAGGGATTGCC
ATGGTGGATTATCCCAAACCAACGTGTTTCTGCATCCACATTTCGCGGACTCGTGATGAA
GACATTCTAGAGCAGCTGTTGGAGTACATTAATCAGCAGCTGATGACCTCCCGAAACTTG
CAACTCCCTCTGAAGGTTGAGTTCTCGGATGGAGAGGTTGCCCTAGATCTTGGAGGTGTT
CAGCTGGAGCTTTTTGACCACATTGGACGTCTCCTTGTGGGCCTGGAGTCCCCCTACTTC
CAACATGACGATAATGGAGTTGTTTGGCCGCGTGACAACCCCGACGTTTCGCGTGAAAAG
TGGGTTTGCATTGGAGTTGTGGTGGGTCTGGCACTGTTTAATGGCTGTCCGCTGTCGTTT
GATATGCCTCTCTCGTTTTACCGCAACTTGCAGGAGTTTTGGGGATCCCCCTGTCGTGTG
ACTGAGGAGGACTACGAGCAACAGGACCCAGTGGCATACAGTTCATTGGTGAGCTTGCGA
AATTTACCCAAAGCTGAACTTGCCGGATTGGGATTGGCATTGAACGACGGTTCCCCGGTC
TCGACCCTGGAGGATGTGAACAAGTACATCTCCGAGTATATCAACAGTCCCTACACTTCT
GTCCGGCTCGACAACATTATGAATATGGTTGCTTTCGGATTCCAGATGGTTTACCCTGCG
GAATTGGCTCGAAAGATGCCCACAAAGGACCTAAAGCGTCTCGTTGAGGGATCCATTCTT
GCTGATGACTCCCACATCGACGTGGAGCCTCTACTAGAGCAGTTCGCCTACGAGGGAGGG
TACTCCGAGTCTTCTCCTCAAGTCAAGTGGCTGAAGGAGTATCTTAGAGGCCTTTCTGTG
CACCAGCTCAAGCTCTTTTTGCATTTCACCACGGGCTCCGAGCGTGTGTCTATTGGAAGT
AAGCAGGGACAGAGGGTCGTCAAGATCACTGTTCAGTTGAATGGAACCAATGTCAACTGT
CTCCCCTCTGCTTCCACTTGTTTTTGCATTCTCTTCTTGCCAAAGTACGAGACCAAGGAG
GTGTTGGTCAGGTACATGGACAAGGCCATGGAGCACAGTGTTGGTTTTGGACTCATGTAG
TATTCAATGGGAGATACTAAATGCACATGAATATATATGGTCAGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D16984g_CDS-001

Protein length: 780 aa.
Product: Conserved hypothetical protein

>YALI0D16984g_CDS-001 MDFKAIHKGYECQISNGCGSVTCSKPYCLSNPRGYQSRNGRFTKAAARQHASNLVMLRGE
DGLCVSLDQLKSCDQTREEDEESNNVDDDNGTDTTKQEHPTKSRASVSQQHESVSLSQSP
ADPNASRDYPKTTLSHSMLKTTVYNVLPSFEDGSWSVILDAKDESTGDRAIDKALDETAP
PGTHDTTLQSMTTPTNFLIHLLKNPGCRDNHTAALPSRKPVFPLNHYLFAFHSRVQFLYG
LQFMGDAVYHEREQLWGDIAQDVVNDVVGFVKSGNVESAKMALVGSLLGGSGFEVDEVDT
AMCDKGKGAEEAKEKLNADSHPVLITRHNPSVSVARVPNLHKVKQYVGLINTPLTSSFSS
ISSDYDSPIVPRHSSDLYQIVQNRAGVSHDQSRLYSFRRMYSLYNGPENLVRRSVYLGIA
MVDYPKPTCFCIHISRTRDEDILEQLLEYINQQLMTSRNLQLPLKVEFSDGEVALDLGGV
QLELFDHIGRLLVGLESPYFQHDDNGVVWPRDNPDVSREKWVCIGVVVGLALFNGCPLSF
DMPLSFYRNLQEFWGSPCRVTEEDYEQQDPVAYSSLVSLRNLPKAELAGLGLALNDGSPV
STLEDVNKYISEYINSPYTSVRLDNIMNMVAFGFQMVYPAELARKMPTKDLKRLVEGSIL
ADDSHIDVEPLLEQFAYEGGYSESSPQVKWLKEYLRGLSVHQLKLFLHFTTGSERVSIGS
KQGQRVVKITVQLNGTNVNCLPSASTCFCILFLPKYETKEVLVRYMDKAMEHSVGFGLM*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG