YALI0D13750g

Overview

Description similar to uniprot|Q02792 Saccharomyces cerevisiae YOR048c RAT1 5 -3 exoribonuclease
Locus type CDS
Locus tag YALI0D13750g

Location

Species Yarrowia lipolytica Positions 1704768..1707849
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 3082 (nuc.)
Previous locus YALI0D13728g Next locus YALI0D13772g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D13750g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D13750gYALI0D13750g_mRNA-001YALI0D13750g_CDS-001

Nucleotide sequence

 

>YALI0D13750g
ATGGGTGTTCCCGGACTGTATCGACACCTGTCTCAGAAGTGTCCCAAGATTGTGAGCGAT
GTGATTGAGGACGAGACGACGATAGTGGACGGTGAGGAGATCCCAGGCTCGGACTACTCC
GCCCCCAACCCCAATGGCGAGCTGGACAATCTCTATCTAGATATGAACGGTATTGTGCAT
CCTTGCACGCATCCCGAGGGTGAGGAGGCTCCTCCGAGCGAAGATGAGATGCTTCTGGCC
GTTTTCAAGTACACGGAGCGGGTTCTGAACGTGTGTCGGCCCCGCAAGGTGCTGATGATG
GCGATCGATGGAGTTGCTCCTCGAGCCAAGATGAACCAGCAGCGAGCCCGACGGTTTAGA
TCTGCCAAGGACGCGGCCATCGAGGCCGAGAGCACGCTGGAGTCCGAGCTCAAGGCCAAG
ACGATTGAGCTCCAGTCGTCGGGCGAAAAGGGCAAAAGTCTGGAGACGATTCTGGACGAG
TTCAAGCAGGGACTGGTGAATAAGCCTGGTAAATGGGACTCCAACGCCATCACCCCCGGT
ACCCCGTTCATGGAGAAGCTGGCTGCTGCTCTGCGCTACTGGGTCGGCTACAAGCTCAAC
ACCGAGCCGGGATGGAGAGATCTCAAGGTGGTCATTTCGGACGCCACCGTGCCCGGAGAG
GGAGAGCACAAGATCATGGAGTTCATCCGGTCACAACGCGGCGACCCTACCTACAATGCC
AACACTTCGCACTGCATTTACGGTCTGGATGCCGATCTGATTTTCCTGGGTCTGGCTACC
CATGAGCCCAAGTTCAAGCTGCTTCGAGAAGACGTGTTTCGCCAGAACAAAACCGCCGGC
CACCAGAAAAAGCCTTTCATCTGGCTCAACATTGACATTCTGCGAGAATACCTGCGAGAA
GACCTGCGATTCACCCACCCACAGACTAAGATTCCGTTTGATCTAGAGCGGGCGATTGAC
GACTGGGTTTTCCTGTGTTTCTTTGTCGGCAACGATTTCCTGCCACATTTGCCGGCCTGC
GACGTGCGCGACGGCTCCATCAACGTGCTGGTCAACCAGTGGAAGAACGGAATGACCCGG
TGGAAGGACTACATCACCTGCGACGGCCATGTGAATCTTGCTCAGGCCCAAGACTTGCTC
AAGAACTTCGCCACCCAGGAGCAGCGCATTCTGGTGCACCAGGAACAGGACCGAGTGGAG
TATGAAAAGTCTCAGGCCAACAAGGCCGCCAAACAGCAGGCCCACAGAGACTCCAAGAAA
CTGAGACAGCAGGGCGAGCAGGCGGCTCTCGAGTCCATGCCTCTGTACGACACCAAGGGT
GAGTCTGTGGGCGACGTTCAGCTCACTAACCGAGAGTTGGTGGGCCAGAGAAACGACATT
ACCCTGGCCAACCTGGCTAATCAGGACGCGGCCGATAAGCTGCGATTTATGCTGAAACGA
GGATCTGATACCGGAGCTGAGGAACCTGCCAAGCGAGCCAAGATTGAAGAGGAACCGAAA
GAGGCCGAATCCAACTCGTCAGAGGCAACTCCTCCAACTGCGAACCCCTCCATCGCCAAC
GACGCAGACCTCTCAAACCCCAACGTGACGGTGCACGAAACCACAGGCTATGCCGATCAT
GTGCAGTTCCACAAGTCTGGATACACAGAACGGTACTACATGAACAAGTTCCACGCCAAG
GAGGACGAGGTTGACAACCTGCGGCGTCAGGTGGCCGAAGAGTATATGAAGGGCGTGTGC
TGGGTGCTCATGTACTACTATCATGGCTGCCAGTCGTGGTCGTGGTTTTACCCTTACCAC
TATGCTCCTCTGGCGGGCGATTTCGACCAGATTTCAAACATGAAGGTGGAGTTCGGAGAG
TCTGCTCCTTTCCGACCTTATGAGCAGCTCATGAGTGTTTTGCCTGCTGCGTCGGGCCAC
AACTTGCCGGCTGTCTTCCGACCTCTCATGTCCGAGGAGAACTCGCCGATTATCGATTAT
TATCCGGAAAACTTCCAGCTGGATCTTAATGGAAAGAAGCAGGAGTGGAAGGCGGTTGTT
CTGCTGCCCTTCATCAACGCTGATCATCTTTTAGAGCACGTTCAGGCCAAATACACCGAG
TTGACACCTGAAGAAAAAGACAGAAACACGCTGCGAGAAGAAATTGTCATTTTCCACCGG
CTCGGCAAGTACGCCAAGACCCTGGAGAAGCGCGGACTGATGGAGAAGGGTGTCATTGTG
TCCAAGAAGCCTCTTGTTTTGAACTCACACGAGACCAGCGGTCTGGCTGGTACCGTGGAG
CGTCAGAATGAAGCGGATCGAACTTCTTCCAAACCCCATCTCACCTTCCCTCTCAATGTG
AGCACGGACCAAACCATGCCCAGCTTTGAGGCGGACAAAAACATGGCCATGACGCTGGAG
TACAAGATCCCCAAGCTCGAATACGAAAACAAGTCCATGTTGCTGCAGGGCTACATTCCC
CCCAAGTACACTCTCAGCGACGAGGAGCGAGAGGCGATTCGAAACCGAGAGCGGCAGCGA
CGAGGTGGCCAGCAGGACTCCCGGCTGTTTTCTAACACGGACCACCGTCAGCAGCAGGAG
CTTCTCATGAACGGCTCCTACCTGGCGTTCAAGAAGCTGTCTCTCAGAGACCAGCCTCCG
CCTGCCAAGGAGGACTGGATGTTGAACGACCCCAAACTGGCTGGAGATCGAGGCAACGGA
GGATACAACAACCGTGGAGGCTTCAACAACCACCGGGGAGGACGAGGAGGCTTCAATAAC
CGTGGACGGGGAGGATTCAACCATGGTGGAGGAGGTTTCAATAATAGCCGAGGAGGTTAT
GGAGGTGGAGGAGGGGGATATGGAGGTGGAGGAGGCCAAGGTTACGGAGGAGGCCAAGGT
TACGGAGGAGGCCAAGGTTACGGAGGAGGCCAAGGTTACGGAGGAGGAGGATATGGAGGT
GGACAGGGCTACGGAGGAGGAGGATACGGAGGAGGATATGGAGGTGGCCATCGAGGCGGT
CATCGAGGAGGTCGAGGAGGTCATCGGTACTAGGCTAGGCTAGATATTCTATGTATATGT
ATTATTATGATGTGATTGGAGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D13750g_CDS-001

Protein length: 1011 aa.
Product: Nuclear 5' to 3' single-stranded RNA exonuclease, putative

>YALI0D13750g_CDS-001 MGVPGLYRHLSQKCPKIVSDVIEDETTIVDGEEIPGSDYSAPNPNGELDNLYLDMNGIVH
PCTHPEGEEAPPSEDEMLLAVFKYTERVLNVCRPRKVLMMAIDGVAPRAKMNQQRARRFR
SAKDAAIEAESTLESELKAKTIELQSSGEKGKSLETILDEFKQGLVNKPGKWDSNAITPG
TPFMEKLAAALRYWVGYKLNTEPGWRDLKVVISDATVPGEGEHKIMEFIRSQRGDPTYNA
NTSHCIYGLDADLIFLGLATHEPKFKLLREDVFRQNKTAGHQKKPFIWLNIDILREYLRE
DLRFTHPQTKIPFDLERAIDDWVFLCFFVGNDFLPHLPACDVRDGSINVLVNQWKNGMTR
WKDYITCDGHVNLAQAQDLLKNFATQEQRILVHQEQDRVEYEKSQANKAAKQQAHRDSKK
LRQQGEQAALESMPLYDTKGESVGDVQLTNRELVGQRNDITLANLANQDAADKLRFMLKR
GSDTGAEEPAKRAKIEEEPKEAESNSSEATPPTANPSIANDADLSNPNVTVHETTGYADH
VQFHKSGYTERYYMNKFHAKEDEVDNLRRQVAEEYMKGVCWVLMYYYHGCQSWSWFYPYH
YAPLAGDFDQISNMKVEFGESAPFRPYEQLMSVLPAASGHNLPAVFRPLMSEENSPIIDY
YPENFQLDLNGKKQEWKAVVLLPFINADHLLEHVQAKYTELTPEEKDRNTLREEIVIFHR
LGKYAKTLEKRGLMEKGVIVSKKPLVLNSHETSGLAGTVERQNEADRTSSKPHLTFPLNV
STDQTMPSFEADKNMAMTLEYKIPKLEYENKSMLLQGYIPPKYTLSDEEREAIRNRERQR
RGGQQDSRLFSNTDHRQQQELLMNGSYLAFKKLSLRDQPPPAKEDWMLNDPKLAGDRGNG
GYNNRGGFNNHRGGRGGFNNRGRGGFNHGGGGFNNSRGGYGGGGGGYGGGGGQGYGGGQG
YGGGQGYGGGQGYGGGGYGGGQGYGGGGYGGGYGGGHRGGHRGGRGGHRY*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG