YALI0D12166g

Overview

Description some similarities with uniprot|P30620 Saccharomyces cerevisiae YMR137c PSO2 DNA repair protein
Locus type CDS
Locus tag YALI0D12166g

Location

Species Yarrowia lipolytica Positions 1512556..1514538
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1983 (nuc.)
Previous locus YALI0D12144g Next locus YALI0D12188g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D12166g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D12166gYALI0D12166g_mRNA-001YALI0D12166g_CDS-001

Nucleotide sequence

 

>YALI0D12166g
ATGGACGAAGATCGCCAGAACCGTTCCAAAAAACTCAAGTATTTGTTCGATCCCCGCCAG
GATGTGTTGAGATTCGGCCAGCCCAAGAAACAGGTCTTTTGTCCGCTGTGTCCGCTGGAC
ATTACGGGACTTAGCATTTCCGAGCGCAACGCCCATGCTGAGAAATGTCTGGGCGTTGAG
TGTCTCGATGATGATGGCGTCACATGTGCTACACCCACCAAAGGCGACCTGACGTTTGAT
ACAAGCACAATTACACCCGCAACAGTCAAGATGGAGGAGATGCAGGCAGTGGGAACGCCA
ATTTTTCTCGCAGACGAATTTCTTCATCTGTTGAAGGGAGGAGTGAAGAGCAAAGTCAAG
GAGGAGATCAAAGACGAGGTGTACTTTAGTGCTGATGAAACCATGGATACGACTGTGGTG
GAGACACAGTCACTGACACGGGCCGTGGAAACACCAACTAAGAAACCGAGACGAGCACCG
CAACGAAAAGCCAAGGCCAAAGAACCCACTTCAACCCAGTCCATGATGGTGTGTAACAGT
CAGGGAGAAATGACTTCTGCTGTTGTAGAGCCTGTCAAGAAACAGAAGCGAGCCAAAAAG
CCGGCACCGTCGTTCAAGATTATCAAGATGGGAGAAACGAACGTGGCGGTGGACTCGTTT
ATGCATGGACCTCTCGAAGGGATCAATCTTTATTTCCTGTCACATTTTCATGCGGATCAT
TATGGAGGACTACGAAAGAGCTGGAATCACGGCCCTATCTTTTGCACACCCATTACTGCA
GCTCTTTGTAAGATGAAACTGGGAGTCCAAGATGAGTGGCTGGTTCCGATCCCCATCCAT
ATTCCGTTCTGTGTCGGTAACGACGTGGAGGTCATCTTCTTTGACGCCAACCACTGCCCC
GGAGCAGCTGTCATGCTGTTCACCAGTCCGACAAAGACAGCTGTTCATTGTGGAGACTTT
CGGGCCAACATGAACCTGGTGCGTGAAATCAAACTGAAACTCAAGCAGCGAGAGCTCGAC
GAGGTGTACCTCGACACCACGTATCTAGGACCCAGCCATGCCTTCCCCAGTCAAAACCGA
GTGGTTCAGGTGTGCGCAGACTTTTGTGTGCGACTAAACAACTTGAAAATGGAGCAACTG
GAGAAAGCTCAACGGCAGTCGACAATCGGAAGATTCTTCACGAGCTCACCCAACTCTCCA
GTACATCAACTTCGCACATTGTTTGTGGTTGGAACATATACCATTGGAAAAGAGAGGCTG
GCAATTGAGATTGCCCTTCGTCTGGGTTCCAAGCTCTTTGCCGACACAACCAAACGCCGC
ATTCTCAAAACATTCAACGACCCCGTCATCTCTGAATTACTAACATCCGACCCTCTAGAA
GCCCAGGTTCACCTCGTACCTCTTGGCCAGACCCGCAAGGACCAGCTGTTTGAGCATCTC
AAGAGCTTCAAGCCGCATTTCTCCAAAATTGTCGCATTTGCTCCCACAGGATGGAGTTAC
CGACCACCCAAAAGTGCTATTCAAGCCAACGAGCAAGCCACAGACCTGCGACCAAGTTAC
TATGACTTTGGAGACCTCGAGTACAATGTGGAGAATCTAGATCGGAATCTGGAACGGTCT
GCCATCGAGCCTGTTCAAAAGTACAACGTCCCGTACTCTGAGCATTCGTCTTTTGTCGAG
CTACGAGCCTTCTGCTTGAACATGGCTGCCACCACCATCATTCCCACCGTGAACATGTCT
GCTGACGAGAGTGTCCGCAGGCAGATGTACTGGCTGGAGATGTGGACCGGACAAGCGAGG
GAAGGAGTCTGACGACTGTACATAACTATTTATTACAAGCGCTAACCATCTGACTAAGCC
GCCTTGATGGTTACTATGCATGTAGCCCGAAGTGTGTGTCTGGTCTGTATTGTGTTTCAT
AGGCAGCATGTAAACATATATGGTGCAAGCATCCTACAGACTGTCGGTTAGACGGGCTGT
TGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D12166g_CDS-001

Protein length: 604 aa.
Product: Conserved hypothetical protein

>YALI0D12166g_CDS-001 MDEDRQNRSKKLKYLFDPRQDVLRFGQPKKQVFCPLCPLDITGLSISERNAHAEKCLGVE
CLDDDGVTCATPTKGDLTFDTSTITPATVKMEEMQAVGTPIFLADEFLHLLKGGVKSKVK
EEIKDEVYFSADETMDTTVVETQSLTRAVETPTKKPRRAPQRKAKAKEPTSTQSMMVCNS
QGEMTSAVVEPVKKQKRAKKPAPSFKIIKMGETNVAVDSFMHGPLEGINLYFLSHFHADH
YGGLRKSWNHGPIFCTPITAALCKMKLGVQDEWLVPIPIHIPFCVGNDVEVIFFDANHCP
GAAVMLFTSPTKTAVHCGDFRANMNLVREIKLKLKQRELDEVYLDTTYLGPSHAFPSQNR
VVQVCADFCVRLNNLKMEQLEKAQRQSTIGRFFTSSPNSPVHQLRTLFVVGTYTIGKERL
AIEIALRLGSKLFADTTKRRILKTFNDPVISELLTSDPLEAQVHLVPLGQTRKDQLFEHL
KSFKPHFSKIVAFAPTGWSYRPPKSAIQANEQATDLRPSYYDFGDLEYNVENLDRNLERS
AIEPVQKYNVPYSEHSSFVELRAFCLNMAATTIIPTVNMSADESVRRQMYWLEMWTGQAR
EGV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG