YALI0D12144g

Overview

Description similar to uniprot|Q06142 Saccharomyces cerevisiae YLR347c KAP95 karyopherin-beta singleton
Locus type CDS
Locus tag YALI0D12144g

Location

Species Yarrowia lipolytica Positions 1508444..1511722
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3279 (nuc.)
Previous locus YALI0D12122g Next locus YALI0D12166g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D12144g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D12144gYALI0D12144g_mRNA-001YALI0D12144g_CDS-001

Nucleotide sequence

 

>YALI0D12144g
TTCGATTCAGCCGTTTGCGAACGACCTTCAATTGGCCGAGGAATTCTTTTTGTGTGGACA
CTAGAGACCGACTTTCGACTTTCGGATATCGACAAATCACAGACTACGACGTGAGTACGA
CGGACGCCATGTGGTGAGGTGTTCAGATGGCCAAGGTGGCCGTTTGCGACCCGTCACGTC
TCTGAGGGACGGGGCGAATAAGGGCATGTTGCGGGTGGCATATGTGGGAATTTCTGACTT
GAACAATGTCGTTTTCCCGCTCAAATTGCCGGCTCTGGAGGTTGTAGCGGGACGCAACTT
GTGTGGGGTATCTTGGAATTGATTTCTCCCTGGCTGGCCAAGGAGACAACTGCTGGGTTA
ACGGGATCGCGCTGGATAGTTGTTTTCGTGGCAGCCATCAGTTTGATTTATGACGATCTT
GTCTCATTAATCGATTGATGACGTGTGTGGTTTGGTCTAGAATACCGCAAACCAGACGTG
GGGTGCACGAGACAGACATCAGCGGCAGAATCGAAAACACGAGCGCACTAAATTTGCACC
CGCAACGTTGCCATTGAAACGACACACACACAACCTATCTAGACCCCTACTAACCCAGAT
GGAAATCGCACCCATTCTTCACGACGCCTTCCAGGGCGCCACGCCTCAGGTGCGAAACGA
GGCCAACTCCAAGCTGGCCGACGCATACCAAAACTACTACGGTGATGTGATGATGGCCCT
CGCCAACTGCATCAGCACTCAGGATACCCAGATACCCGATGAAATCCGAGTGCTTGCTGG
TATTGCCATCAAGAACAACTTGACATCCAAGGACCAGGAGGTCAAGCAGGAGCAGGCCAA
CAAGTGGTTGGCTGCCGATGGATCCGTTACAGATCAGATCAAGAGCATTCTGTTGGAGGT
TCTGAAGAGCACTAACAACCAGGTGGCTTCAGCAGCAGCCCAGGCCGTGGCCGCCATTGC
GGAGATTGATCTGCCCCAGGGACGATGGTCCAGTCTCATGACCACCCTGGTGGAGAACAC
CAAGGACGAGCAGCCCAGTCACATCAAGATGGCCGCTCTGCAGTCTATTGGTTTCATCTG
CGAGCGAGCAGACCGAAACAATGCTGGTGTGGTTTCCCAGGCATCAGGCATTCTTACTGC
CATTGTGCAGGCGGCACAGTCCAAGGAGTCGGACCAGAACGTGCGGCTCAAGGCCATTGA
GGCACTGGGCGACTCTCTGGATTTCATCAGAGACAACTTTGCCCGGGACGGTGAGCGAAA
CTGCATCATGGTTGTCGTGTGCGAAGCCACCCAGAGCGATTCTGCCAAGCTGCGGGAAGT
CAGCTACGGCACAATGTCTCGAATCATGACCAAATACTACCAGTTCATGGAACTGTACAT
GAAGCAGGCTCTGTTTGGCGTTACCGTCAAGGGCATGCAGGATTCCGACGACTCGGTGGC
ATGCATGGCTGTGGAGTTCTGGTCGTCCGTATGCGAGATTGAGGACAAGAACCAGCGGAC
CGGCGAGGAGTGCTTTGGCTTCGCCAAGGTGGCTGCCCCCAAGGTTCTGCCCATTCTCTT
GGAGCTGCTCAACCGGCAGAACGAGTACGATGACGACGAGGACTGGAGTGTTAGCATGGC
TGCTGCCGCCTGTCTGCAGCTGTTCGCGCAGACCATTGGTAACGACGTGGTGCCTCTGAC
TCTGCAGTTTGTCGAGCAGAACATTGGAAATACCACCAGCTGGAGAAACCGGGAGGCCGC
TGTCATGGCCTTTGGTTCTATTCTGGACGGTCCTGACAACGCCCATCTGGCCGATCTCAT
CAAGCAGGCTCTAGAGCCCATTCTCAACCTGATGAATGACGACTCTCTGCAGGTCAAGGA
CACCGTGGCGTGGTGTCTGGGCCGAATCTCCGATCTGGTCATCAACGCCATTGACGAGCA
AGTCCATCTGCCCGTCATCATGAATACCCTGCTCAAGGGACTGCAGGACGAGCCCAAGGT
CATCACCAACTGTTGCTGGACTATCATGAACATTTTCGAGCAGCTTGGCCACGGCGGCGT
CAACCAGGAGACCACCGTCGTCTCCCCCTACTACCCCCAGGTGCTGCCTGCTCTGTTGAA
CGCCGCTTCTCGAAACGACAACGAGAACAACGCCCGAACCGCTGCTTACGAGGCTCTGTC
GACCCTTGTTGTTGTGTGTGCCAACGATTGCATTGAAGCCGTGCTTGAGCTGTCGGGCGA
GGTTGTCACTCGTCTGGAGACCACTCTGGAGATGCAGCAGCAGATTGTCGGCATGGACGA
CCGAATCAACCTGGAGGAGCTGCAGATCAACCTGCTCGGTCTGCTGACCAACATCATCCG
TCGAACTGACAAGCTGGTGCTGCCCGCATCCGACCGGCTTATGACTCTGTTCCTGAACCT
GCTGCAGAACAAGCTTCCCAACTCGCTCATCGAGGAGGACGTGTTCATTGCTATTGGAGC
TGTCGCCGATGCCAACGGTGAGGGCTTTATGAAGTTCATGGAGTCTCTCAACCCCTTCCT
TCTGCGCGCTCTGGAAGATCCTTCTCTCATTGTGTGCAACACTGCAGTCGGTCTGGTGGC
CGACGTGTCCAACGCTCTGGGCCCTGCCATTGACCAGTTCTCCGACCAGTACATGCAGCT
GTTTGTCACCGATTTGCAAAACCCCAAGGCCCAACAGGTCATCAAGCCCTCGATTCTGTC
GTGCTTTGGAGACATCGCGTCAAGCATTGGCCCCAAGTTTGAGCGGTACTTTTCTTTTGT
CTTCCCTGTGATTGAGCAGGCGTGCCAGCTGGATGTGCCTGACCAGTACTCCGGCTATGC
CGTGTCCGAGGAGTTCCTTGACTTTGTCGCCAACCTGCGTGAGCGAATCATCGACGCATT
TGTCGGCATTGTCACCGGTCTTCGAGACTACCCTGCTCTGTTTGCTCCCTACGTCCCCAC
TCTGTTCAACTTCCTGTCCAAGGTGGCCGTGGACCCTCTGCTCGCTCCTGTGGAGTCTGT
GGCTCGGTCCGTTGTGGGTATCATTGGTGATGTTGCCACCATGTATCCCGGTGGAGACTT
CAAGGAGGCATACACTAAGCCATGGGTGCTGGAGTTCATTCGACGAACTCGAAGCGATCC
CGAGTTCACTGACGAGACCAAGATTACCGCTCGATGGGCACGTGAGCAGCAGAAGCGACA
GCTGGGCGAGAAATAGGCTGTCTGAGATGAGGGAACAAGTTTTTGCACAAAAAATAGCAT
GATACCGGAAAAATAGAAAACAAGCGTTTGAGTATGACT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D12144g_CDS-001

Protein length: 866 aa.
Product: Karyopherin beta, putative

>YALI0D12144g_CDS-001 MEIAPILHDAFQGATPQVRNEANSKLADAYQNYYGDVMMALANCISTQDTQIPDEIRVLA
GIAIKNNLTSKDQEVKQEQANKWLAADGSVTDQIKSILLEVLKSTNNQVASAAAQAVAAI
AEIDLPQGRWSSLMTTLVENTKDEQPSHIKMAALQSIGFICERADRNNAGVVSQASGILT
AIVQAAQSKESDQNVRLKAIEALGDSLDFIRDNFARDGERNCIMVVVCEATQSDSAKLRE
VSYGTMSRIMTKYYQFMELYMKQALFGVTVKGMQDSDDSVACMAVEFWSSVCEIEDKNQR
TGEECFGFAKVAAPKVLPILLELLNRQNEYDDDEDWSVSMAAAACLQLFAQTIGNDVVPL
TLQFVEQNIGNTTSWRNREAAVMAFGSILDGPDNAHLADLIKQALEPILNLMNDDSLQVK
DTVAWCLGRISDLVINAIDEQVHLPVIMNTLLKGLQDEPKVITNCCWTIMNIFEQLGHGG
VNQETTVVSPYYPQVLPALLNAASRNDNENNARTAAYEALSTLVVVCANDCIEAVLELSG
EVVTRLETTLEMQQQIVGMDDRINLEELQINLLGLLTNIIRRTDKLVLPASDRLMTLFLN
LLQNKLPNSLIEEDVFIAIGAVADANGEGFMKFMESLNPFLLRALEDPSLIVCNTAVGLV
ADVSNALGPAIDQFSDQYMQLFVTDLQNPKAQQVIKPSILSCFGDIASSIGPKFERYFSF
VFPVIEQACQLDVPDQYSGYAVSEEFLDFVANLRERIIDAFVGIVTGLRDYPALFAPYVP
TLFNFLSKVAVDPLLAPVESVARSVVGIIGDVATMYPGGDFKEAYTKPWVLEFIRRTRSD
PEFTDETKITARWAREQQKRQLGEK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG