YALI0D09977g

Overview

Description similar to uniprot|Q12250 Saccharomyces cerevisiae YDL147W RPN5 Essential, non-ATPase regulatory subunit of the 26S proteasome lid
Locus type CDS
Locus tag YALI0D09977g

Location

Species Yarrowia lipolytica Positions 1262771..1264223
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1453 (nuc.)
Previous locus YALI0D09955g Next locus YALI0D09999g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D09977g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D09977gYALI0D09977g_mRNA-001YALI0D09977g_CDS-001

Nucleotide sequence

 

>YALI0D09977g
ATGTCGACCGACGAATCACTGATCAAAGCGGAAAAGGACTACACCGAGGAGCTGGACGCC
CAGCTGCCCGAGATCCGCACTCTCGCCAAATCCAACATTGCTGCTGCGCTCGAAAAGCTG
CTGGTGCTGGAGAAGCAGACCCGACAGGCTTCTGACCTGGCCTCTTCCAAGCGGGTGCTC
AAGGAGATTGTGGAGACGACCAAGGATGCGGATAAGGACTGGTCGCTGCTCAATGAGCAG
GTTCAGCTGCTGTCCAAGAAGCATGGCCAGCTCAAGACGGCAATTGGCTACATGATCCAG
AGTGTCATCGACCTGCTGGACAAGGCCCCGTCTGAGGCCACCAAGATCGCCACCATCGAG
AACATCCGAACTGTCACTGAGGGCAAGATTTTTGTGGAGGTTGAGCGAGCACGAGTGACT
CTGACTCTGGCTAAGATTCGAGAGGCTGAAGGTGATATCGCCACTGCTTGCGACATTCTG
TGTGAGCTGCAGGTCGAGACCTACGGCTCTATGGACCAGCGAGAGAAGACAGAGTTCATT
CTCAAGCAGGTGGAGCTATGTATTCTCAAGGGCGACTTCACCCAGGCTCTCATTTTGTCG
CGAAAGATCCTGGTGCGCTACTTTGAGAACCCTGATGTCCACGATCTCAAGCTCATCTAC
TACGACTACATGATCAAGATCTCTCTGCACGATCACAAGTACCTGGACGTTGCCCAGCAT
TACCTGCACGTCTACGACACTCCCAGCGTGGTGGCTGACCCTGCCCAGTGGAAGCCCGTG
CTCACTCACATTGTCTATTACCTTGTGCTGGCGCCCTTTGACAATCTGGAGTCCGATCTC
CTGCACAAGATCAACCTCGACCACAAGCTGCAAACGCTGCCACTACAGGCCGAGCTGGTC
AAGAACTTCATTGCCAACGAGCTGATGCGATGGCCGAAGGTGGAAGAGGTGTATGGCAAG
GAGCTGCGACAGAGCGACGTCTTCTCGCCCAAGGAGGACGACGGCGACCGACGGTGGGAT
GATCTGCGAAAGCGGGTCATTGAACACAACATCCGAGTAGTGTCCAAATACTACACTCGA
ATCCGAACCGCTCGACTGACCCAGCTGTTGGATCTCACCGAGAAGGAGACCGAGGAGTTC
ATTTCGTCACTGGTGACCCAGGGAACCATCTACGCTCGAATCAACCGACCCGAGCGAGTG
GTCACCTTTGCCAAGCCCCAGGACACCAACGATATTCTCAACACATGGTCTGCCAACATT
GGCACTCTGCTGGACCATGTGGAGTCCATTGGTCATCTGATCACCAAGGAGGAGATGATG
AACGGCATCAAGTCACAGTCTTAGAGTCTCGGTAGTAGCATCTAATGTTATTTTATGATA
AATCAGACTACCTGTACACGCAAGTAGTGGTATTTTGCATATTTTTTTGTAGATTTGATG
TTAAGTAAAATTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D09977g_CDS-001

Protein length: 448 aa.
Product: Subunit of the CSN and 26S proteasome lid complexes, putative

>YALI0D09977g_CDS-001 MSTDESLIKAEKDYTEELDAQLPEIRTLAKSNIAAALEKLLVLEKQTRQASDLASSKRVL
KEIVETTKDADKDWSLLNEQVQLLSKKHGQLKTAIGYMIQSVIDLLDKAPSEATKIATIE
NIRTVTEGKIFVEVERARVTLTLAKIREAEGDIATACDILCELQVETYGSMDQREKTEFI
LKQVELCILKGDFTQALILSRKILVRYFENPDVHDLKLIYYDYMIKISLHDHKYLDVAQH
YLHVYDTPSVVADPAQWKPVLTHIVYYLVLAPFDNLESDLLHKINLDHKLQTLPLQAELV
KNFIANELMRWPKVEEVYGKELRQSDVFSPKEDDGDRRWDDLRKRVIEHNIRVVSKYYTR
IRTARLTQLLDLTEKETEEFISSLVTQGTIYARINRPERVVTFAKPQDTNDILNTWSANI
GTLLDHVESIGHLITKEEMMNGIKSQS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG