YALI0D09955g

Overview

Description similar to uniprot|Q10752 Schizosaccharomyces pombe Putative ATP-dependent RNA helicase cdc28
Locus type CDS
Locus tag YALI0D09955g

Location

Species Yarrowia lipolytica Positions 1259037..1262246
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3210 (nuc.)
Previous locus YALI0D09933g Next locus YALI0D09977g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D09955g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D09955gYALI0D09955g_mRNA-001YALI0D09955g_CDS-001

Nucleotide sequence

 

>YALI0D09955g
ATGTCATGGATCTCGGACAAGCTGATAGAGATCACGGGCGCATCGGACGACATGTTGGTG
GACTTCTGCCAGGCGCAGGCCAAGGAGGCAGCCTCAGCTAAGGATCTACTGACCCAGTTG
ACTGATATGGGTCTAGAGGGGAACGGGATCAAGTCTTTTGCCTCCGAGTTGTGGGGCAAA
TACCATGTTTCAAAGCCCAAGCCAAATGTCCCCGTGGCTTCTGCATCCACCAAGTACGAT
CTTCTGCTTGATCCCGTGGAAAAGAAGCCGTCTCGGCCTCCGAAAAGGGTCTCTGAGGAG
TCCAAGAGCACCAAGCGGAGAAGGAGGTACTCTTACAGCGACAGCGAGAGCGAGGATGAC
CGCCGAGAGCCCCGAGGAGAGCGACGCGATGACAGCGACAAACCTGAAGTGAAACAGCAA
GCATATACCGTGGATGATATCCATTCCGACTACGACAGTGAGAAAGATGCACGCGAGCGA
GACGAGTTTGCCCAACGGCTGGCAGAACGAGACTCGAAAAAGGGAGGAAAGAAGGACGAC
GACCGGGCTGCACGCAACAAGGAGCGTGAGCGAATGGCCGATGATCTGGAGAAGCACAGG
GAGGAACTGGATCAGATGCGATCCATAGCTCGAAAGGAGTACCTGTCGAAGAGAGAGCAG
CAGCAGCTGTATCTGCTGGAGCGAGAAGTGGAGGACTTTGAAGACGATGTGCGCAAGTAT
GGTTGGGAAAATCTCACCAAGGAGGAGCAGCGGGAGATTGAGTACAAACGTCAGGTTCTC
AAGATTGCCCAGGAAAGAAAAGAGATTGATAGAGGTGTCGATGGATACAGTATTCCGGAT
GCATACATTACTGAAGGAAAACGGAGCTCTGATAAGGACAAGGACTCACTTATGAAACGG
TATGAGCGGAAACCCGAACGAGAAATGGAGGATGGAGAATTGTGGGAGCAGAGCAAACGA
GGTGACGCTGGTATTCGAGAAAAGACTCATGAGAAAGATAAGGAGGAGGACAAGTACGAG
TTTGTTTTTGATCCCCGTCAGGCTATCAAGTTCACTGCTGATACTGACGAGGACAAGGGA
AGCAAATCAAAGAGCGAGGCTGAAAAGGCCATGCTGAAACAGATTGAGGACGCAAAAAAG
CATGCCAAGTCGATTGACGAGGTTCGAAAGTCGCTACCTGTGTACAAGTACCGAGACGAG
ATTCTGGGAGCTATCAAGGATCACCAGGTTCTTGTTATTGTTGGAGAAACAGGTTCCGGT
AAGACCACCCAGCTTCCTCAGTACCTGCATGAGGCAGGGTATACGCAGCGGGGTATGGTT
GGTTGCACTCAGCCTCGACGAGTTGCTGCCATGGCCGTTGCTACACGAGTTGCTGAGGAG
GTGGGATGTCGAATCGGCCAGCAAGTTGGGTACAACATTCGATTCGAGGACAAGACATCT
GAGAAGACCGTAATCAAGTACATGACCGATGGTATGCTTCTTAGAGAGTTTTTGACGGAC
CCTGAACTGTCCGGATACTCTGCCCTGATGATCGACGAGGCCCACGAACGTACTTTGCAT
ACTGATGTTGTTCTAGGTCTTCTAAAAGACATTGCGCGTGCTCGACCGGAACTCAAACTA
ATCATTTCTTCCGCTACCATGAACGCCAAGAAATTCTCTGCCTACTTCAACGACTGCCCC
ATCTTCCAGGTACCCGGTAGACGGTTCCCTGTTGCAGTTCATCATACAGAGAAGCCCGAG
GCCAACTATCTGCACGCCGCCATCACCACCGTCATGCAGATTCATGCTACCCAGGGCAAA
GGTGATATTCTTGTCTTTCTTACAGGTCAGGATGAAATTGAAAACATGGCTGAGAACCTG
CAAGAGACAATCAGGAAATTGGGCTCGAAATGTCCGCCTATGATTGTGTGTCCCATCTAT
GCTAACCTTCCTGCAGAACTACAGGCTCGAATCTTTGACCCTACGCCTGAGGGATCCAGA
AAGGTGGTTCTTGCTACTAATATCGCGGAAACGTCTATTACCATTGATGGAATTGTCTAC
GTAATTGACCCCGGCTTTGTCAAGGAGAATGTTTTCAACCCAAAGACAGGAATGGAATCG
CTCATAGTCACGCCATGTTCTCAGGCCTCCTCCGAACAGAGACGCGGACGAGCTGGTCGT
GTGGGTCCAGGCATGTGTTTCAGACTCTATACGAAACGAGCGTTTGAGTCTGAGCTTCCT
CCTAACACTACGCCTGAGATTCTGCGTTCCAATCTCTGTGGCGTGGTACTGATGCTCATG
TCTCTGGGTATTGTTAACATCTTGTCCTTTGAGTTCATGGACCCTCCTCCTAAAGATACC
TTGATCAAAGCGTTGGAGCTTCTTTATGCTCTGGGAGCCATCAACGACAAGGGCCAGCCT
ACAAAGATTGGACGTCAAATGGCCGAATTCCCCACTGATCCCATGCTGGCTCGTGCTATT
TTGGCGTCTGAAAAGTATCAGTGCACATCTGAAGTGCTTTCGATTGTGTCTATGCTTGGT
GAGGCGGCCTCTCTGTTTTTCAGACCCAAGGATAAGAAAATGGCTGCCGACAGAGCACGA
GAGATGTTCACCAAGCCCGGTGGAGATCATCTAACTCTTCTAGAGGTGTTTCGACAATGG
TCGCTGGCCGACTACTCTCAGCAGTGGGCCAAGGACAACTTTATGCAGTACAAGTCTCTG
ACTCGTGCTCGAGATGTGCGAGACCAGCTCTACAACCTCTGCGACCGAGTTGAGATTGAT
CCCGAAGTGTCTGCTGCTGAGCTGGAAGACCCGCAAACGGCGATTCAGAAGGCTCTCACA
GCAGGTTTCTTCCCCAATGCTGCTCGTCTGAACAGGGGAGGCGACTCGTACAAGACCGTC
AAGTCAAACCAGACGGTGTATATCCACCCTTCCAGTGTGTTACATCTGCAGCGGCCCAAG
TGGCTGTTGTACCACGAGCTGGTTCTCACGAGCAAGGAGTACATGCGTAACTGCATGCCT
CTGGAGCCGCAGTGGTTGACGGAAGTGGCTCCGCACTTTTACAAAGAGGCGGACATTGAG
CGGATGATCAAGGCGCCTGCCCGAGTCGAGGAGAAGCTGCTTGAGTAGTGCAGTGGATGT
ATTTAATGTATTTTTAGCATATTCAGTGACAGAGAGAACTGCCAGACTATTGGGAGATCG
GACAAGTCACTGAACTTGAACTGGAGGCAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D09955g_CDS-001

Protein length: 1036 aa.
Product: ATP-dependent RNA helicase, putative

>YALI0D09955g_CDS-001 MSWISDKLIEITGASDDMLVDFCQAQAKEAASAKDLLTQLTDMGLEGNGIKSFASELWGK
YHVSKPKPNVPVASASTKYDLLLDPVEKKPSRPPKRVSEESKSTKRRRRYSYSDSESEDD
RREPRGERRDDSDKPEVKQQAYTVDDIHSDYDSEKDARERDEFAQRLAERDSKKGGKKDD
DRAARNKERERMADDLEKHREELDQMRSIARKEYLSKREQQQLYLLEREVEDFEDDVRKY
GWENLTKEEQREIEYKRQVLKIAQERKEIDRGVDGYSIPDAYITEGKRSSDKDKDSLMKR
YERKPEREMEDGELWEQSKRGDAGIREKTHEKDKEEDKYEFVFDPRQAIKFTADTDEDKG
SKSKSEAEKAMLKQIEDAKKHAKSIDEVRKSLPVYKYRDEILGAIKDHQVLVIVGETGSG
KTTQLPQYLHEAGYTQRGMVGCTQPRRVAAMAVATRVAEEVGCRIGQQVGYNIRFEDKTS
EKTVIKYMTDGMLLREFLTDPELSGYSALMIDEAHERTLHTDVVLGLLKDIARARPELKL
IISSATMNAKKFSAYFNDCPIFQVPGRRFPVAVHHTEKPEANYLHAAITTVMQIHATQGK
GDILVFLTGQDEIENMAENLQETIRKLGSKCPPMIVCPIYANLPAELQARIFDPTPEGSR
KVVLATNIAETSITIDGIVYVIDPGFVKENVFNPKTGMESLIVTPCSQASSEQRRGRAGR
VGPGMCFRLYTKRAFESELPPNTTPEILRSNLCGVVLMLMSLGIVNILSFEFMDPPPKDT
LIKALELLYALGAINDKGQPTKIGRQMAEFPTDPMLARAILASEKYQCTSEVLSIVSMLG
EAASLFFRPKDKKMAADRAREMFTKPGGDHLTLLEVFRQWSLADYSQQWAKDNFMQYKSL
TRARDVRDQLYNLCDRVEIDPEVSAAELEDPQTAIQKALTAGFFPNAARLNRGGDSYKTV
KSNQTVYIHPSSVLHLQRPKWLLYHELVLTSKEYMRNCMPLEPQWLTEVAPHFYKEADIE
RMIKAPARVEEKLLE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG