YALI0D09713g

Overview

Description highly similar to uniprot|P21576 Saccharomyces cerevisiae YKR001c VPS1 member of the dynamin family of GTPases
Locus type CDS
Locus tag YALI0D09713g

Location

Species Yarrowia lipolytica Positions 1227900..1229962
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 2063 (nuc.)
Previous locus YALI0D09691g Next locus YALI0D09735g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D09713g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D09713gYALI0D09713g_mRNA-001YALI0D09713g_CDS-001

Nucleotide sequence

 

>YALI0D09713g
ATGGACAAAGAACTCATCAGCACAGTAAACAAGCTGCAGGATGCGCTGGCCACCGCGGGC
CCGGCGTCCAACCCCATCGATCTGCCCCAGATCACGGTGGTGGGCTCGCAGTCGTCGGGC
AAGTCCTCGGTGCTGGAGAACATTGTGGGCCGAGACTTTCTGCCCCGTGGCACCGGTATC
GTCACGCGACGACCGCTGGTGCTGCAGCTCATCAACCGACGGCCCACTGACGAGCTGGGC
GCCCAGAAAGACGTTTCCGGCGAACGAACCAACGAGACCAACGAGGACGAGTGGGGAGAG
TTTCTGCACCTGCCCGGCAAAAAGTTCCACGACTTCAACGAAATCCGAAACGAAATCGTG
CGCGAGACGGACGCCAAGACCGGCAAGAACCTGGGAATTAGCTCCGTGCCCATCAACCTG
CGTATCTACTCGCCCCACGTGCTGACCCTGACTCTGGTCGATCTGCCCGGTCTCACCAAG
GTGCCTGTGGGCGACCAGCCCAAGGACATTGAGCGGCAGATCCGAGAAATGGTACTCAAG
TTTGTCTCCTCGCCCAATGCCATCATTCTGTCCGTCACAGCCGCCAACACCGATCTGGCC
AACTCGGACGGTCTGAAACTGGCTCGAGAAGTCGACCCCGAGGGAGCCCGAACCGTCGGA
GTGCTCACCAAGATTGATCTGATGGACCAGGGAACTGACGTGATTGATATTCTGGCCGGA
CGAGTCATCCCCCTCAGATACGGCTACGTGCCCGTTATCAACCGAGGACAGAAGGATATC
ACCTCCAACAAGAGTATCAAGGCCGCCCTGGAGTACGAGAAGGACTTCTTTGAGAACCAC
CCCTCGTACAAGGCCAAGGCCCAGTACTGTGGTACTCCTTACCTTGCCAAAAAGCTCAAC
AACATTCTGATGCTGCACATCAAGGCGACTCTTCCAGACATTAAGGCCCGAATCGACAAG
ACTCTGCACAAGTACCGAACCGAGCTCGATCAGCTGGGACCCTCTACTCTTGGTTCCTCC
TCCTCTATCGTTCTGAACATGATCACTGAGTTCTGCAACGAGTACCGAGCCGTTCTGGAT
GGTAAGGGACAAGAGGTAACTTCTCTGGAGCTTTCTGGAGGTGCCCGAATCTCGTTTGTG
TTCCACGAGATTTACTCCAATGGTGTCAAGGCTCTAGACCCCTTTGACCAGATTAAGGAT
GTGGATATTCGAACCATTCTGTACAACTCTGCCGGTTCTTCGCCGTCACTGTTTGTAGGC
ACTGGCGCTTTCGAGGTGCTGGTCAAGAAGCAGATCAGACGATTCGAGGACCCCTCTCTG
CGGTGTGTCACTCTTGTCTACGATGAATTGGTGCGAATCATCACCCAGATTCTCACCAAG
CCTTCTTACCACCGATACCCTGCTCTCAAGGAGAAGATCAACGCGGTAGTGATTGCCTTC
CTGCGACAGTCTCTGGTGCCCACCAACAAGATGGTCACCGACACCATCAACGCCGAGGAG
TCGTACATCAACACTGGTCATCCCGACCTGCTCAAGGGCTCTCAGGCCATGGCTATTGTG
TCTGAGAAGATGGGCGGCACCACTGGCGTGCCCAAGGCCATCGACCCTGCCAACCCTGCG
GCTGAGGAGTCCACCGGCTTCTTTTCGCAATTCTTTGCCTCCAAAAATAAAAAGCGACTT
GCTGCCATGGAGCCCCCGCCAGCTGTTCTCAAGGCTTCTGGTACCATGACCGAGCGAGAG
ACTCTGGAGACGGAGGTGATCAAGCTGCTGATCCAGTCTTATTTCAACATTGTGCGACGG
ACCGTGGCCGACATTATTCCCAAGGCTGTCATGTTGAAGCTGATTATGCATTCCAAGCAG
GAGATTCAGAAGGAGCTGTTGGAGAACTTGTACAAGTCGGACAATCTGGACGACATGGTC
AAGGAGAACGATTTCACTGTGCAGCGACGAAAGGAGTGCCAGAAGATGGTCGAGGCTCTT
TCCAAGGCCGCTGAGATTGTGCAGAGTGTATAGATAGAGCAGAGCACCTAATTAGAGATG
GATTAATGAATTATGAGGTTAGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D09713g_CDS-001

Protein length: 671 aa.
Product: Dynamin-like GTPase required for vacuolar sorting, putative

>YALI0D09713g_CDS-001 MDKELISTVNKLQDALATAGPASNPIDLPQITVVGSQSSGKSSVLENIVGRDFLPRGTGI
VTRRPLVLQLINRRPTDELGAQKDVSGERTNETNEDEWGEFLHLPGKKFHDFNEIRNEIV
RETDAKTGKNLGISSVPINLRIYSPHVLTLTLVDLPGLTKVPVGDQPKDIERQIREMVLK
FVSSPNAIILSVTAANTDLANSDGLKLAREVDPEGARTVGVLTKIDLMDQGTDVIDILAG
RVIPLRYGYVPVINRGQKDITSNKSIKAALEYEKDFFENHPSYKAKAQYCGTPYLAKKLN
NILMLHIKATLPDIKARIDKTLHKYRTELDQLGPSTLGSSSSIVLNMITEFCNEYRAVLD
GKGQEVTSLELSGGARISFVFHEIYSNGVKALDPFDQIKDVDIRTILYNSAGSSPSLFVG
TGAFEVLVKKQIRRFEDPSLRCVTLVYDELVRIITQILTKPSYHRYPALKEKINAVVIAF
LRQSLVPTNKMVTDTINAEESYINTGHPDLLKGSQAMAIVSEKMGGTTGVPKAIDPANPA
AEESTGFFSQFFASKNKKRLAAMEPPPAVLKASGTMTERETLETEVIKLLIQSYFNIVRR
TVADIIPKAVMLKLIMHSKQEIQKELLENLYKSDNLDDMVKENDFTVQRRKECQKMVEAL
SKAAEIVQSV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG