YALI0D08690g - PDA2

Overview

Description uniprot|Q6C9S7 Yarrowia lipolytica YALI0D08690g PDA2 2-oxoisovalerate (lipoate) dehydrogenase E1 alpha chain
Locus type CDS
Gene name PDA2
Locus tag YALI0D08690g

Location

Species Yarrowia lipolytica Positions 1115714..1117244
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1531 (nuc.)
Previous locus YALI0D08668g Next locus YALI0D08712g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D08690g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D08690gYALI0D08690g_mRNA-001YALI0D08690g_CDS-001

Nucleotide sequence

 

>YALI0D08690g
ATGCTTCGAGCCGTTTCCAACCACGCCTGTTTGAGACAGGCTCTTTCCAGTACTCGGACT
CTGAGAACTGGTCTCCAAAAACATGTCCATAAGACCCAGTTTGTGTCTGTGCGACACGTG
TCGACCACTAAACCCACTGAGCGGGCGGAGGTCGAGAAGCCCATTGTTCAGAATGGCGAG
CTTGTGTTCCCCGGAGCTCTGCGAACGTCGTTTGTCAACAACATGACTTTTGTGGACCCC
ACGACCCAGGATTCCATGCCTACTTACCGAGTAGTAGGGCCCGATGGCGTGCAGATTGAC
AAGTCGTACAAGATTGATCTGCCCGTCGACACCATTCTCAAAATGTACAAGGACATGGTG
ACTGTGAGCATCATGGACGCCATCATGTTTGACGCACAGAGACAGGGCCGTCTGTCCTTC
TACATGGTTTCCGCGGGAGAGGAAGGTATGGCTGTGGGCTCAGCAGCCGCCCTCAAGCCT
CAGGATCATGTCTACTCCCAGTACAGAGAGCAGGGAGCGTACATGTATCGAGGATTCACT
CTGGACGACTTCATGAACCAGCTCTATGGAAACAAACACGACCAGGGCAAGGGAAGAAAC
ATGCCGGTGCATTATGGCTCCAGAGAGCTCAACATGCATACCATTTCGTCTCCTCTGGCC
ACCCAGCTGCCTCACGCTGCTGGAACAGCCTACGCTCAGAAGATGGCTGGCGTCGATGGA
GTCACCCTGTGCTACATGGGTGAGGGAGCTGCCTCCGAGGGTGATTTCCATGCCGCTCTC
AACATTGCTGCTACTCGAAACTGTCCCGTCATCTACTTCTGTCGAAACAACGGCTATGCC
ATCTCTACTTCTGCCATTGAACAGTACAAGGGAGACGGTATTGCGTCCCGGGCTATTGGT
TACGGCATTGAGACAATTCGAGTGGACGGAAACGACATTTTCGCCGTGCATCGAGCCACC
AAGAAGGCCCGAGAAATCGCTCTCAGAGACCAGAAGCCCGTTCTCATCGAGGGCATGTCG
TACCGAGTGTCTCATCACTCCACCTCCGACGACTCGTTTGCATACCGGTCCCGAGGCGAG
GTCGAGAGTTGGCAGCGAAAGGACAACCCAATTGTCCGTCTCAGAAAGTGGCTGGAGCTC
AACAAGCATTGGAACGAGGAGGAAGAGCAAAAATTCCGAACCCAGGCCCGAAAGGATATC
CTCACTGCCTTTTCCAAAGCCGAGAAGGTCAAGAAGCCCGAGATTGTGAGCGCCTTTACC
GATTGCTGGGAGGATATTCCTCCCCATCTCAAGGAGCAACAACAGGAGCTTGGAGAGATT
CTCGATACTTATCCCGAGCATTTTGACCTGTCTGCTTTTGAGGGTGGACGAGGAGGTCTG
CATGATAAGTGAGCGGAGTCAGCGCGCGTGAGCGAAGCGAAAGTGCTGACCTTGTAAGCA
TGTCAGCATTATTTATAGCTCAATCGCCCCCCCCCTTTGGTGGTGATAAAATGAATTATA
TTTGATATTCTATGTTGGAGTACTTGCAGTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D08690g_CDS-001

Protein length: 464 aa.
Product: 2-oxoisovalerate (lipoate) dehydrogenase E1 alpha chain
Gene: PDA2

>YALI0D08690g_CDS-001 MLRAVSNHACLRQALSSTRTLRTGLQKHVHKTQFVSVRHVSTTKPTERAEVEKPIVQNGE
LVFPGALRTSFVNNMTFVDPTTQDSMPTYRVVGPDGVQIDKSYKIDLPVDTILKMYKDMV
TVSIMDAIMFDAQRQGRLSFYMVSAGEEGMAVGSAAALKPQDHVYSQYREQGAYMYRGFT
LDDFMNQLYGNKHDQGKGRNMPVHYGSRELNMHTISSPLATQLPHAAGTAYAQKMAGVDG
VTLCYMGEGAASEGDFHAALNIAATRNCPVIYFCRNNGYAISTSAIEQYKGDGIASRAIG
YGIETIRVDGNDIFAVHRATKKAREIALRDQKPVLIEGMSYRVSHHSTSDDSFAYRSRGE
VESWQRKDNPIVRLRKWLELNKHWNEEEEQKFRTQARKDILTAFSKAEKVKKPEIVSAFT
DCWEDIPPHLKEQQQELGEILDTYPEHFDLSAFEGGRGGLHDK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG