YALI0D08668g

Overview

Description similar to uniprot|P35178 Saccharomyces cerevisiae YDR087c RRP1 involved in processing rRNA precursor species
Locus type CDS
Locus tag YALI0D08668g

Location

Species Yarrowia lipolytica Positions 1113880..1114910
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1031 (nuc.)
Previous locus YALI0D08646g Next locus YALI0D08690g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D08668g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D08668gYALI0D08668g_mRNA-001YALI0D08668g_CDS-001

Nucleotide sequence

 

>YALI0D08668g
ATGGCTGCTGGCAAAGTGAAAAAGGGGTCCAAGAAGGCCGCCATCAAGGCAGATAAGCCC
TACTCTAAGAAGGAAGACAACTCCGCGGATGATATCCAGCTCGGAAGCCCCGATGCTTAC
CCGTTTATCAAGAAGCTGGCTGCCAATGACCGACCCACTCGAGACGAGACTCTCAACTCG
CTCAAGCGGTTCCTGGGAACCCCCAAGGCCTTTGGTGAGCTCGAACTGCTTAAGCTGTGG
AAGGGTCTGTTCTTCTCCATGTGGTTCAGCGACCGACCTCGAACACAGCAGCGTCTGGCC
GACGACATGGCTTCTCTGCTGCTGGTTGTCCACGAGACCAACTACTTCACATTCCTGGCT
TCTTTCTGGAAGATTATGAGCGCCGAGTGGCTCGCGCTAGACAAGCACCGAATCGACAAG
TTTTACCTGCTGCTTAGACGGTACGTGGGCTTCGCCTTCCAGCGACTTGCCAAGGAGGAC
TGGGACGAGACCTGGATCGAGCGACACAATGAGGTGATGAGCAAGATCCCTCTCAACCCC
GAAAACCCCAAGATCCCCGACAGTATTCGGTACCACGTGCTGGAAATCTATCTAGAAGAG
CTGGCCAAGGTGGTGCTCAAGGACAAGAAGGAGGCCGAGAACGAGGAAGAGGAGGCCGAG
CTGGTCAAGGAGCTGTTTGCCGACGTTCCCGTTTCCGAGCTTCTCGAGGCAGTCGAGACT
CTGTCCGAGGAGACCAAAAACTCGGTCGTTCAGAAGCGATGTGTGGAGGACGTGCTCGAG
AACCCTCTGCTCATCGAGTGGGGTGTTGCCGAGGAGCTCGAGGGCGCTGGCGAGGAGGAC
GAGGAGGACGAGGAGGACGAGTGGGCTGGGTTTGTTTAAACCCGAGTCTCCGACCATAGC
TATCTGGCTCCAAATGGTTTCCCTATAGAACATCACCAAGGATCTAGCAAGCAGTATACG
GATACTAGAGATCCATCCATAAAAGACATAGACATATATTTAATATTCACGTACAGATAG
TTGTTAGGCGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D08668g_CDS-001

Protein length: 293 aa.
Product: Essential evolutionarily conserved nucleolar protein, putative

>YALI0D08668g_CDS-001 MAAGKVKKGSKKAAIKADKPYSKKEDNSADDIQLGSPDAYPFIKKLAANDRPTRDETLNS
LKRFLGTPKAFGELELLKLWKGLFFSMWFSDRPRTQQRLADDMASLLLVVHETNYFTFLA
SFWKIMSAEWLALDKHRIDKFYLLLRRYVGFAFQRLAKEDWDETWIERHNEVMSKIPLNP
ENPKIPDSIRYHVLEIYLEELAKVVLKDKKEAENEEEEAELVKELFADVPVSELLEAVET
LSEETKNSVVQKRCVEDVLENPLLIEWGVAEELEGAGEEDEEDEEDEWAGFV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG