YALI0D08294g

Overview

Description weakly similar to uniprot|P35729 Saccharomyces cerevisiae YKL057c NUP120 nuclear pore protein
Locus type CDS
Locus tag YALI0D08294g

Location

Species Yarrowia lipolytica Positions 1062070..1064981
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 2912 (nuc.)
Previous locus YALI0D08272g Next locus YALI0D08316g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D08294g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D08294gYALI0D08294g_mRNA-001YALI0D08294g_CDS-001

Nucleotide sequence

 

>YALI0D08294g
ATGGTGGCGAAAACGTTTCGAGAGGAGCCCGTCGGCGGCACCCATCAACAAGTGGAATAC
TTGTTTCCCAACGTGGAGATTGATGGCTCGAAATTGATCACGAAAAAGGTGGTGGACGAA
AGAAAGCGAAAACTGGAATCTGACGATGCCGAGGAGGTGTTTCTGCGACGCTACGTGTCC
AAGGAAGGGCAGATGTTCCAGAGCTCGACCAATGGCGAGTTTTCTGTGCGCTTCTTCGAC
GAGTCGCACATCATGGAGGTGACTGGAGTGAATCACGATCGCAAGAGTGTGCGTATCTAT
TTTCCCGAGGGACTACAGAACCATTGCACGTGTGTGACTGAAAAGGATGGGGTTCTTTAC
ATTGATTCCATTTCAAACAGCTTTCTGCTGTACAGCGTGAAGCTGCCATTTGCTCTGTTC
AATGAGGACAACACCGAGCATTACGACACCTCACGGTTCTTTCAGCAGCAGGAGGACTAC
GGCATTCGAAGCCGAAAGCCGCTTCTTCTCAAGTCGCTCAAGGGCCAGTCCAACGAACTT
GTGCTATCTTTATGCGACGGAGGACTCATGAAATTGGAACGACAAGAGAAGAACGGCCTG
TTTCTGACATCGTTATTTTCCGACCCCTCGTATCTCACGAGCCTCAAGGACCGGTTCTTC
AGCAAGGACAAGATTGCGTCCATGCCGCATCTCAGCATCCACGCTATTATCTCTATGACA
AACTTTGAGAACCACCTGTTGACCGTGTCTGTCAACCAGACTCTCAAAAAGTGGGATCTG
AATACTCTCACCGGCACAGAAATCAAGTTTGACAGCGACAAGAGCAAACTCGACACTGAG
CCTGTCACTCGAGTGTGTGCGTCGGGCGAGTTCTTCATCACCTTTTGTGGAGAAACCATC
TACTTCTGGGATCAAAACTTCGTCCAGGTCTTCTCGTCCAAGATCCCAGACATTGGACTA
TGGTCGCTAAAGGACATGGCGTTCCGTCAAAACGAGGGTCAGTTCGAGGTCTCCACCGTG
TGGATGTCTGGTGTGTCCCACGTTGTCAAGAAGGCTACAGTAAACAGAAATGGAGACATC
CAGTGGTCTGAGTGTGGAACACCTCTTCGAATGCTCCCACCACTCACAGTCCACGACTAC
GAGCGTGCCGTCTCTCTTTACAGCGTGCCCCTTCTCAAGGCTGCTCTTTCCATCTTCTCT
CGACATGGAGGAGGAGGAAACACCATCAGTGAAGCCATCTCGTCACAGCTCAGACTCTAC
ACTAACCACAGCGGTCCCGACTACACTGGCTACGCCAAGGACCAGGTTGAGGCTTGGAGC
AAGTTTGAAGGTATCTGCCAGGAGCTCAGCAGACAGGCTAGTGCATGCATCGGAAGCAGT
CTTTCTGGTGCCCAGATCTATATTCTAACTGGAACCGGTGTGTCTACCATCCGACCTTCC
ACTGAACTAGAAAAGCTGTACGATGAGAGAAACATTGATGGCTCCAACTTGTCCAAGCTC
ATGTTCACTATTGATCGGTTCACTCAACAGCTGACAAACCGAGCTCGACGAAATATTGTA
TCGTTCATGGAGGAGGACATCCTGGCTCTGCCCCACTACTCTCAGGGCAACCGAATGGCC
GACATGATGAACGTGCTCATCAAGGAGGTGCCCAAACTGGCGTACAAGAAGCTGTTTGAC
TCGTTCAACGGCGTATACAACCTTCTCGATACCTTTGACGACCTGGCTGCCGTAATGGAT
ACGTCTAGAGGCTCCATTGATACAGCCTATGTTATGTGTCTTGATGCTTTGGTCTCTCTT
TTGCTCATTTACAACCGAGACGGAGATGAAACCGGTCTGGACAAGAACAGAGTCGTTCGC
GTGTTTGTGCGGTTCATGAACCACTTTAGAACATTCACAATTGCCCGAGAGTGTGCATTT
CAACAGGGCGAGCGATACGGCACTCTGGACAACTTTTCGGAGACCAGGTTTTTCGAGGTG
CTGGCTCGACTACCTGCTGATCGAGCAGCCAAGCTCACACGGTTCCTCAACACTGACCGA
CCTTCTCGGTTTGTTAAGGGTCTGATTCTGCTCCGTATGGGTGAGTCCCGAAAGGCCAAG
CGATGTTTCTTTGAGGGAGAGTTCCCCTCCGACGATACACTGAGCCACTTTGGTCTGCCA
GCTCGAGGACAAGACTCATACTACGAGTACACGAGCAAGGTGATTGCGGGTCTTGGATTC
AACGAGCTCGCCGTCATTTTTGCATCCAGAGTAACAAACCCAGACACAGCCTGTCTCATC
AACAAGTTCCGATACGCCTTGGCTGCCCGAAACTACGACGTCGCATACTACACTGCCATT
GCTGAGCTCAAGCATAAGGACAATGTGGCCGAGCTGATCCTGGACATGGCCAAGCATCAG
CCCCTGAGGCTGCTCACCTACCCCTTCACATCCTACCATCCTCTGGTGGATGCAATTCTG
GCCTCGTCCAGCTTGCCCAACAAGTACAAACTGTTGTACGCCTGGAGAGTTTCTCGGGAG
GACCTCAAGGGAGCTGCCTGTGCTCTGTACGAGCAGCTACTGACAGTCAAGCAGGGTATT
GACCAAGGAATGTCTGAGAAGAAGACGTATGTGGCCGAGCTCTACTCCAGCATTCTCAAC
GTTCTGGCTCTTCAGGGCAAGGACGATGCCTGGTTTGTTTCGAATGGAAAGGTTCACACT
CTGCAGGATGTTGAGAACGAACATAGCCAGTGGTTGGCAGGTATGGTTCGGGAGATGAAG
TTGGTGTTGAGGTAGAAGGAAGAGTGAGAGTAAGAGTTGCGTAGTGACTCTGAGCGGACC
TACAGATAATGCCAGAGGTTTGATAATCATGACATATATCTTTGGCATTAATAAATGATA
TATATTGTATAACAGGAATGTTGTGTATTTGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D08294g_CDS-001

Protein length: 925 aa.
Product: Conserved hypothetical protein

>YALI0D08294g_CDS-001 MVAKTFREEPVGGTHQQVEYLFPNVEIDGSKLITKKVVDERKRKLESDDAEEVFLRRYVS
KEGQMFQSSTNGEFSVRFFDESHIMEVTGVNHDRKSVRIYFPEGLQNHCTCVTEKDGVLY
IDSISNSFLLYSVKLPFALFNEDNTEHYDTSRFFQQQEDYGIRSRKPLLLKSLKGQSNEL
VLSLCDGGLMKLERQEKNGLFLTSLFSDPSYLTSLKDRFFSKDKIASMPHLSIHAIISMT
NFENHLLTVSVNQTLKKWDLNTLTGTEIKFDSDKSKLDTEPVTRVCASGEFFITFCGETI
YFWDQNFVQVFSSKIPDIGLWSLKDMAFRQNEGQFEVSTVWMSGVSHVVKKATVNRNGDI
QWSECGTPLRMLPPLTVHDYERAVSLYSVPLLKAALSIFSRHGGGGNTISEAISSQLRLY
TNHSGPDYTGYAKDQVEAWSKFEGICQELSRQASACIGSSLSGAQIYILTGTGVSTIRPS
TELEKLYDERNIDGSNLSKLMFTIDRFTQQLTNRARRNIVSFMEEDILALPHYSQGNRMA
DMMNVLIKEVPKLAYKKLFDSFNGVYNLLDTFDDLAAVMDTSRGSIDTAYVMCLDALVSL
LLIYNRDGDETGLDKNRVVRVFVRFMNHFRTFTIARECAFQQGERYGTLDNFSETRFFEV
LARLPADRAAKLTRFLNTDRPSRFVKGLILLRMGESRKAKRCFFEGEFPSDDTLSHFGLP
ARGQDSYYEYTSKVIAGLGFNELAVIFASRVTNPDTACLINKFRYALAARNYDVAYYTAI
AELKHKDNVAELILDMAKHQPLRLLTYPFTSYHPLVDAILASSSLPNKYKLLYAWRVSRE
DLKGAACALYEQLLTVKQGIDQGMSEKKTYVAELYSSILNVLALQGKDDAWFVSNGKVHT
LQDVENEHSQWLAGMVREMKLVLR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG