YALI0C06061g

Overview

Description similar to uniprot|P53096 Saccharomyces cerevisiae YGL194c HOS2 putative histone deacetylase
Locus type CDS
Locus tag YALI0C06061g

Location

Species Yarrowia lipolytica Positions 778522..779910
Strain CLIB 122 Strand Sense
Chromosome YALI0C Total length 1389 (nuc.)
Previous locus YALI0C06039g Next locus YALI0C06083g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C06061g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C06061gYALI0C06061g_mRNA-001YALI0C06061g_CDS-001

Nucleotide sequence

 

>YALI0C06061g
ATGTCAGAACCAACCATCGTGTTTGACTCCAAGACGGTGGAAAACACGCCTCTCTACGAG
TCGTTTCTGACGACACAAAAACGCCGCGTGTCGTACCATTTCAACGAGGAGGCTGCGCGA
TACCATTATGGAGTCCGTCACCCCATGAAACCGTTTCGACTCATGCTGACAGACCATCTG
GTGCTGGGATACAAGCTACACAACAAACTGGACTTGTACAGATCCCGAAGAGCCACAGAA
ACAGAGGTGCGGGAGTTCCACGCCGAAGAGTACATTGATTTCTTGCAACGTGTCACTCCG
GATAACATCAAAAAGTTCCAGCGAGTTTTACCCAAGTTTAACATTGGAGACGATTGTCCC
ATTTTCGACGGCATGTACGACTACTCGATCATTTACGCAGGTAGCAGTTTGGACGCGAGT
CGAAAGCTTCTTGCTGGCCAGTCAGATATCGCCATCAACTGGTCTGGAGGTCTGCATCAT
GCGAAAAAGTTTGAAGCCAGTGGATTCTGTTATGTGAACGACATTGTGTTGGCGATTCTG
AACCTTCTCAGAATGTATCCACGTGTTCTTTACATTGATATCGACATTCACCACGGAGAC
GGAGTGCAGGAGGCGTTCTATTCGACCGACCGAGTCATGACTCTGTCGTTCCACAAGTAT
AACGGAGAGTTCTTCCCTGGTACGGGAAACTTTGACGAGATTGGAACTAGTCTGGGCAAG
AACTACTCACTCAACGTGCCGCTACGAGACGGAATCGACGACGAGTCGTACGTGCGGCTG
TTCAAGAGTGTTTTAGAGCCTGTTCTCAACAGTTACAGACCCTCGGCTATTGTGCTTCAA
TGTGGAGCTGATTCGCTTGGTGGAGATCGTTTGGGATGTTTCAATCTCAACATCAAGGCC
CATGGAGAGTGCGTTGCATATACAAAGTCGTTTGGCCTGCCTCTGATTGTGCTTGGAGGA
GGAGGATACACCCCTCGCAACGTGTCTCGATTGTGGTGTTATGAGACCAGTGTGTGTCTG
GACGTTGATCTGGAGACTCGGTTGCCTTCTTCCATGCCTTTTCTCAAGTATTTTGCTCCA
GATTACTCGTTGCATCCCAACCTGGCTGGTAAGATCGACAACAAGAACTCCCGCAAGTTT
CTGGATTCTGTGCATGTGCAGGTGATGGAACAGCTGAGAACTTTGCAGGGAGCCCCCAGT
GTTCAGATGGCTGAAATTCCGCCGGACCTGGCCGGTCTGACTGAGGAGGGAGAAAAGCAG
CGACGAGATGAGCTTGACGAGGCGATGAAGGATGCGAGGTAGTCGGGCATGGAGCACATT
ATATTTATTGTAAATAGGCAGGGAGTCGAAAGGCTCGTAATCAACTAATGATGATATTGG
GGGCACAGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C06061g_CDS-001

Protein length: 434 aa.
Product: Histone deacetylase and subunit of Set3 and Rpd3L complexes, putative

>YALI0C06061g_CDS-001 MSEPTIVFDSKTVENTPLYESFLTTQKRRVSYHFNEEAARYHYGVRHPMKPFRLMLTDHL
VLGYKLHNKLDLYRSRRATETEVREFHAEEYIDFLQRVTPDNIKKFQRVLPKFNIGDDCP
IFDGMYDYSIIYAGSSLDASRKLLAGQSDIAINWSGGLHHAKKFEASGFCYVNDIVLAIL
NLLRMYPRVLYIDIDIHHGDGVQEAFYSTDRVMTLSFHKYNGEFFPGTGNFDEIGTSLGK
NYSLNVPLRDGIDDESYVRLFKSVLEPVLNSYRPSAIVLQCGADSLGGDRLGCFNLNIKA
HGECVAYTKSFGLPLIVLGGGGYTPRNVSRLWCYETSVCLDVDLETRLPSSMPFLKYFAP
DYSLHPNLAGKIDNKNSRKFLDSVHVQVMEQLRTLQGAPSVQMAEIPPDLAGLTEEGEKQ
RRDELDEAMKDAR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG