YALI0C03894g

Overview

Description hypothetical protein conserved in the Yarrowia clade
Locus type CDS
Locus tag YALI0C03894g

Location

Species Yarrowia lipolytica Positions 516550..518424
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 1875 (nuc.)
Previous locus YALI0C03872g Next locus YALI0C03916g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C03894g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C03894gYALI0C03894g_mRNA-001YALI0C03894g_CDS-001

Nucleotide sequence

 

>YALI0C03894g
ATGGACAAAGCCAAGAGGCAGGTAGCAGCTCCTCCAGCCGCAGCTCCTCCAGCAGCACCA
CCTGGAGCACCAGCAGCACCCGGAGCACCAGCAGCACCCGGAGCACCCGAAAACAACGTC
ACGTCGCAAACGACACAAATGGAAACTACCAGTGACGAAACTGGGCCCAGCACGGACCTC
AGCTCTGCGCTCAGCACAAACACCAACACAGACACAAACACAAACACTGGACCCTCCACA
ACATCGTTGCAGTCCCTCACAACATCGGACACAAGCAGCATTCCCACCACGTCGGCCGGC
GAGTCGTTTTCGAGCACCTCAGAGACCCCCAGTATATCGTCGTCCAGCGAGATCCCCAGC
ACGTCGTCCATTGAAACCGCATCGTCGGTAGAGTCCAGTTCTACGGAGGTGTCTTCTACG
GTGGAATCAACCACAGAATCGAGTACTGAGTCCTCTCTGCCCCCTACAACTTCGACAGAA
CCATCTACGACAAGTGAGCCTCCTACGACTTCATCAGAGCCGCCAACAACTAGTTCAGAG
CCTCCTACAACAAGTTCCGAGCCTCCGACTAGCAGTTCTGAGCCCCCCACAACCTCCTCA
GAACCTTCCACTTCTTCCATTCCTTTTGCATCCTCATCCTCATCTTCGTCTCCACCCTCA
TCTTCATCTTCATCTTCATCTTCATCATCTTCATCATCTTCATCATCTTCTTCGTCTGCG
ACTACCTCTTCTTCTTCTATACCCTCTTCCACCACATCGACACAGCCGCGGACCACGTCC
CAGCCACCCACAACTACCTCGGAGTCGTCCACGTCGGAATCCCCGTCTCCAACCACCACG
TCTACCACTGCAGAAAGCACCACCACGCCGCCGATCTCATGGTCGTCTTCCGGCTCGGTG
ACCTTCTCCAACGGTGTCCCTGTGACAATGACGCAGACTGTAGACCTGCTGGTGACCAGG
ACCAACCCTGATGGATCGCTGGTAACAGTGCGCGCCGGATCGCATGACTCTTCTTCCAGT
TCAGGAGGAGGCACGTCCACAGGCACCATTGTGGGCTCCGTTGTGGGCTCTGTGGCCGGA
GTCGCCGTACTGGCGGTGTTGGTGCTCATGTTCATTACACGCAAGAAGAAGAAGTCACTC
ATTGACGTGCTCACGGGCCACACCAAGAGCAACAGTGAGCTGGGCGCAGACACGCCGCCC
TTCTCAGATTACCACAATGACAACCACTCACCTCCTGAATCGTATTCGGGCTACCGAGGC
TGGTCTGCCACTCCTGGTGCGGCCCTTGTGGATGACAACAGCACCGTGCCTCCCAGCTCC
TCTGGGGGACCCGGAAGTGCTGCTCTGTCGCGTTCTGCGTCTGGAGTTTACAGATCCGGG
TCGCAGAATAGCAATGCCGACTACTCGTATTATCGACAGCCCCGAAATGTTGCTTCTGAG
GGCATGACGCAGATTGACTCGCTACCCGAGAACCCACAGTACGATGTGCCGTTCGAGTAC
GCGCAGAGCATTCCCGAAAGTCCGCCTCGAGGCCGGTTCACTGAACAGGACGACTCGCCC
GACGAGGACTTTGATTTTGTGGTGCATCCCTCCGAGTCGCAGACGTCACAGGTGGCGTCC
GAGAACTCGCGCAACCTGCCCATCAACTCGCTCATGCATCAGTATGAGCGTGTGCATGGA
ATTGGGCCCGAGGAGGATGTGCCCATGGACGGTCTTCCCATTCCACTGGGATACTACGAG
ACAGTTATGGAGGAGGACGAGACGCCTCATCCAGTGTATGCCCAACCCAAGGCTGCTCCT
AGCAGGGAGAGTCGGTTTACTGAGACGGGCTCTTTGTAGACGTTTGTATTTTATGCATTA
TTTATTTAGAACATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C03894g_CDS-001

Protein length: 613 aa.
Product: Hypothetical protein conserved in the Yarrowia clade

>YALI0C03894g_CDS-001 MDKAKRQVAAPPAAAPPAAPPGAPAAPGAPAAPGAPENNVTSQTTQMETTSDETGPSTDL
SSALSTNTNTDTNTNTGPSTTSLQSLTTSDTSSIPTTSAGESFSSTSETPSISSSSEIPS
TSSIETASSVESSSTEVSSTVESTTESSTESSLPPTTSTEPSTTSEPPTTSSEPPTTSSE
PPTTSSEPPTSSSEPPTTSSEPSTSSIPFASSSSSSSPPSSSSSSSSSSSSSSSSSSSSA
TTSSSSIPSSTTSTQPRTTSQPPTTTSESSTSESPSPTTTSTTAESTTTPPISWSSSGSV
TFSNGVPVTMTQTVDLLVTRTNPDGSLVTVRAGSHDSSSSSGGGTSTGTIVGSVVGSVAG
VAVLAVLVLMFITRKKKKSLIDVLTGHTKSNSELGADTPPFSDYHNDNHSPPESYSGYRG
WSATPGAALVDDNSTVPPSSSGGPGSAALSRSASGVYRSGSQNSNADYSYYRQPRNVASE
GMTQIDSLPENPQYDVPFEYAQSIPESPPRGRFTEQDDSPDEDFDFVVHPSESQTSQVAS
ENSRNLPINSLMHQYERVHGIGPEEDVPMDGLPIPLGYYETVMEEDETPHPVYAQPKAAP
SRESRFTETGSL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG