YALI0B20460g

Overview

Description similar to uniprot|Q9USP9 Schizosaccharomyces pombe Hypothetical coiled-coil protein with RNA recognition motif
Locus type CDS
Locus tag YALI0B20460g

Location

Species Yarrowia lipolytica Positions 2697747..2699270
Strain CLIB 122 Strand Sense
Chromosome YALI0B Total length 1524 (nuc.)
Previous locus YALI0B20438g Next locus YALI0B20482g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0B20460g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0B20460gYALI0B20460g_mRNA-001YALI0B20460g_CDS-001

Nucleotide sequence

 

>YALI0B20460g
ATGATTCCCGAAAACGAGCAGCCGCAACTAAAGCAATGGGCTTTGCAACAGCTCGAGAAC
CTGAGTGATGCCGACACGTCGATTCTTGGCGACTACGTGATCGCCCTCGCCAACTACGAC
ATGCCCAAGTCGGAGCTTGCGGAAATGTGCAGATCCCAGTTGTCGGAGTTTTTGCATGGC
AATACGGACGCCTTTGTCGAGGCTCTAATGCACGCTATTGAGACCAAAAGTTATATGCAA
GAGCCCCTCCAGCAGCCACAGCAACAGCAACAACAGCCGCAGCAGCAGCAGCAGTTCCCA
CAGCAGCAGCAACAAGGTCAGTTCCCTACACCACCTCCGTTTCCTCCGGGATTCGACTTT
GCACAGATGCAACAGATGGGATTTCCCATGCCTGGTATGAACGTGCCGTTGCCCAGCCAC
CAGGGATTCATTTCCGGCCAGCAGAAGCGATACAACAATAACAACAATGGAGGAAACAAG
CGGGGCATGAGCGCAATCTCCACACCTCATTCGTCGACAGAGTACAACAGAAAGCTTGTG
GTGGAAAAGATCCCCGACGACTACTGTTCTGAGCAGGCCGTGCGAGACTTCTTCTCAAAG
TTTGGAACTCTCAACTCGGTCAAGGTGAATTTTGCCGGTAAGCTGGCAGAGATCGAGTTC
TCGACCACAGCCGAGGCTAAGAACGCGTACAAGTCGCCTGAGACTATTTTTGACAACCGT
TTTGTCAAGGTGTACTGGCGCAAGACTGACGACGAGACTCCTGAGAACGAGGTCGCAGAG
CAGCAGAGACTGCAGGAGGAGCGACAGGCTGCGTTTGAGGAGAAGGAGCAGCGTCGAAAG
GAGCATTTGGAGAAGATGACCGGAATTCTGGCCCAGAAGAAACAGCTGTTGGAAATGCAG
ATTGAGCAGCAGGAACTTCTCGCGAAGATGGGACAGCCCGTTACCCAGGACGTGGAAGAT
CTTCGAAACCAGCTGGCAGAGATTCTGGAGCATGAGAAGGACCCCACCAAGGTCTTCAAG
TCCACCTCAGCGGCTTCGTCGTTTGCTCCTCGAGGAAGAGGAGGCTTCAGAGGTCGAGGA
GCTCGAGGTAGAGGTGCCTTCCGAGGCCGAGGAGGTTACCACCCTTATGGAGCTCCACCT
GCACGAGAAAACGTGGATAGAACCAAGTTTTCTCTCGATCTGCGACCCAAGGACGTTTTA
ATCTCTCCTGTCACGGCGGACAAGCAGGAACACATTCGAGCCCACCTGGTGAGTGTTGGA
GAGTACTCCAATGTTGCCCAAGCAAGTGGAGACTCTGTGGTGGTCAGCTTTCCCGACAGA
AGAGCCGCTGAGAAGTTCTTCTACGGCTCTGCTGATATTCCGGACGTTGGAAAGGTGGAC
AAGCAGTGGTTTAAGCAGGTCAAGAAGGATGGTGAGGGGTCTGAGGTCAAGACGGAGGAC
GTGAAGATGGAGGAGAACTAATTTAGAGAAGTCTTCGGCATTGTATATTAAGTGTTAGAG
AAATAAAATTATGTATTACAACTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0B20460g_CDS-001

Protein length: 487 aa.
Product: Coiled-coil protein with RNA recognition motif, putative

>YALI0B20460g_CDS-001 MIPENEQPQLKQWALQQLENLSDADTSILGDYVIALANYDMPKSELAEMCRSQLSEFLHG
NTDAFVEALMHAIETKSYMQEPLQQPQQQQQQPQQQQQFPQQQQQGQFPTPPPFPPGFDF
AQMQQMGFPMPGMNVPLPSHQGFISGQQKRYNNNNNGGNKRGMSAISTPHSSTEYNRKLV
VEKIPDDYCSEQAVRDFFSKFGTLNSVKVNFAGKLAEIEFSTTAEAKNAYKSPETIFDNR
FVKVYWRKTDDETPENEVAEQQRLQEERQAAFEEKEQRRKEHLEKMTGILAQKKQLLEMQ
IEQQELLAKMGQPVTQDVEDLRNQLAEILEHEKDPTKVFKSTSAASSFAPRGRGGFRGRG
ARGRGAFRGRGGYHPYGAPPARENVDRTKFSLDLRPKDVLISPVTADKQEHIRAHLVSVG
EYSNVAQASGDSVVVSFPDRRAAEKFFYGSADIPDVGKVDKQWFKQVKKDGEGSEVKTED
VKMEEN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG