YALI0F28435g

Overview

Description weakly similar to uniprot|P32569 Saccharomyces cerevisiae YER022w SRB4 RNA polymerase II transcription mediator
Locus type CDS
Locus tag YALI0F28435g

Location

Species Yarrowia lipolytica Positions 3616037..3617725
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1689 (nuc.)
Previous locus YALI0F28413g Next locus YALI0F28457g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F28435g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F28435gYALI0F28435g_mRNA-001YALI0F28435g_CDS-001

Nucleotide sequence

 

>YALI0F28435g
ATGAGCGACATCAAAGTCACCTTAGCGGTGGAAGATCGGGCTGAGAACCAAGACACATTA
AGTATTTCAGAAATCGTGCCTCGGATCGTTGCTGAACGGAAGTCGTTCGTGGACGTTACC
GAGGAGTCGCTACTCGAGGAAATCGCCAATTGTGTGGCTGACTCGGCTGACGACAATGTG
AAGGATGAGGTGGATGAGAAGCCCGATGAGTCCCCCTTTGACCAGCACCGACTCAAGCTG
CTGGAGAACGTCAAAGCCGCATACAACGAGAGTGCGCTGGCGCTAGATTTCGTGTCACTG
CTCATTTCGAGCGTGCGACCCACTTCTGCATCCACGTCCATGTCTCCACATCTCAAAACA
CACATTCCTGTGGGCTCTCTGGGTGCAGACCGAGTGCCTGCTCCCCAGGTGGCCAACGAG
CCCGGCGTTGGCATTGGATGGAAAATTGAGTCTTTGACAAACGCGCGTGACCGACTCAAG
ACGTGTGCTTCGAGGCTGCGGACTGAGGCTGCCAAGGAGAAGACCTACTGGGCTGGCGTT
GCCTCTATTGCTGCGACTGGCGAGGTTCTTTTCAAGGTGCGAAATTCTGATACCCGAGGG
CTAGGCATCAAGTATGGTTTTGGAGACGCTGGAAGTAAATATCGTGATCCAGGTATCGGT
GTGTTGAAGCGTTCGGCTACAGGAACTGTGGACTTCGAGCCCAAGGAGGAGGTGCAAAAG
AAGTTTGTCAGAGTGACTATTAAGTCTGAAGAGGGAGAAGTCACCAAAAGTGTCAGCAAT
GTATATACCAGGGACTCTAAGCCGCCAACTGACCCGACGCTAGCTGCTATTCACGAGACT
CGCCATGCACTGTTTGAAGAAGAGTTGTTCTTTGAGATTGCCAGAGAGGCAAGACTGCTG
ACCTCGAGAAAGGTGACCGTTGCTGATGGAGCTGTAACGGTGGATCTGGGCGAAGGGGAC
ATGGTTGTGATTGAGTGGGTGGAGGTCCCAGAAGAGCCTACAACTACATTTGCACCTTCT
CTAGCAAACTTATTTGTGCTGGCGCTGAGACTGCTGCTGGCTAATGCTCATCGACAGCAA
TTGGAGAAGATGAGAACTCCCCCTGCTCCGTTGCAATCTAAGGGTGGTCCCAATCCCAAC
CCTCCTCTGCCTATACTAAGACCTCTTCTCGCACACATTCTGCACAAGCGGCTGGTGAGT
CGCGCCAGAAGATCCCTCTATCTTCTGTCTACAACCCATTCCGGTCTCAGCTTCGAGATA
ACCACAAACAACTCTACAGATAAGGAATCTTCTTCTTTGGGTCGACTCATGGCAGCTCCT
GTTTCCAATCTCAAGATCAAGTTTTCGGACAAGGGTAATGCCAAGGTAGTTATTCCTTCT
CCTCTACAGTCGCATCAGTCGATGTTCGATGTGACCATGTTCAAGGGTACCTCTCAGGAG
ACTGTGACTAGCCATACTGGGTTCCATGAGCTGGTCGAGTTGGAAGAGTGGGTGCGGTGG
GCTGCCGATAGATCTGAGCCCAAAAAGAGTAACTAAGTGGCCGACTCCACTCAAGTTTAG
TTGACACGAGTTGGCTCACTTTTAACTATTACTTATGCTGTCGTTTTCAGCTGATCCATT
AATTATATATGCTGTACTAATGGGAGTCAGCCGACAGTTAGGAATTGTAACAATACACAC
TTTGTATAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F28435g_CDS-001

Protein length: 512 aa.
Product: Conserved hypothetical protein

>YALI0F28435g_CDS-001 MSDIKVTLAVEDRAENQDTLSISEIVPRIVAERKSFVDVTEESLLEEIANCVADSADDNV
KDEVDEKPDESPFDQHRLKLLENVKAAYNESALALDFVSLLISSVRPTSASTSMSPHLKT
HIPVGSLGADRVPAPQVANEPGVGIGWKIESLTNARDRLKTCASRLRTEAAKEKTYWAGV
ASIAATGEVLFKVRNSDTRGLGIKYGFGDAGSKYRDPGIGVLKRSATGTVDFEPKEEVQK
KFVRVTIKSEEGEVTKSVSNVYTRDSKPPTDPTLAAIHETRHALFEEELFFEIAREARLL
TSRKVTVADGAVTVDLGEGDMVVIEWVEVPEEPTTTFAPSLANLFVLALRLLLANAHRQQ
LEKMRTPPAPLQSKGGPNPNPPLPILRPLLAHILHKRLVSRARRSLYLLSTTHSGLSFEI
TTNNSTDKESSSLGRLMAAPVSNLKIKFSDKGNAKVVIPSPLQSHQSMFDVTMFKGTSQE
TVTSHTGFHELVELEEWVRWAADRSEPKKSN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG