YALI0F28457g - PEX5, PAY32

Overview

Description uniprot|Q99144 Yarrowia lipolytica YALI0F28457g PEX5/PAY32 Peroxisomal receptor for the C-terminal tripeptide signal sequence (PTS1) of peroxisomal matrix proteins
Locus type CDS
Gene names PEX5, PAY32
Locus tag YALI0F28457g

Location

Species Yarrowia lipolytica Positions 3618578..3620412
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1835 (nuc.)
Previous locus YALI0F28435g Next locus YALI0F28479g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F28457g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F28457gYALI0F28457g_mRNA-001YALI0F28457g_CDS-001

Nucleotide sequence

 

>YALI0F28457g
ATGTCGTTTATGAGAGGAGGAAGCGAATGCTCTACGGGCAGAAACCCCCTGAGCCAGTTC
ACCAAACACACCGCTGAGGACCGATCCCTCCAGCATGATCGGGTGGCGGGTCCCTCTGGG
GGCCGAGTTGGAGGCATGCGATCCAACACTGGCGAGATGTCACAGCAGGACCGAGAGATG
ATGGCGCGATTCGGTGCTGCCGGACCCGAGCAGTCGTCTTTCAACTACGAGCAGATGCGA
CATGAGCTCCACAACATGGGTGCCCAAGGAGGCCAGATTCCCCAGGTTCCCAGCCAGCAG
GGCGCTGCTAACGGAGGACAGTGGGCCCGAGACTTTGGAGGACAACAGACCGCTCCCGGC
GCTGCTCCCCAGGACGCCAAGAACTGGAACGCCGAGTTCCAGCGAGGAGGATCTCCTGCA
GAGGCCATGCAACAGCAGGGTCCCGGCCCCATGCAAGGCGGCATGGGTATGGGGGGAATG
CCCATGTACGGCATGGCTCGTCCCATGTACTCTGGAATGAGTGCCAACATGGCTCCTCAG
TTCCAGCCCCAGCAGGCTAACGCACGAGTTGTCGAGCTGGACGAGCAGAACTGGGAGGAG
CAGTTCAAGCAGATGGACTCTGCCGTTGGCAAGGGTAAGGAGGTCGAGGAGCAGACTGCC
GAGACTGCTACTGCCACCGAGACTGTCACCGAGACTGAAACCACTACTGAGGACAAGCCC
ATGGATATCAAGAACATGGACTTTGAAAACATCTGGAAGAACCTCCAGGTCAACGTTCTC
GACAACATGGACGAGTGGCTGGAGGAGACCAACTCGCCCGCGTGGGAGCGAGACTTCCAT
GAGTATACCCACAACCGGCCTGAGTTTGCCGACTACCAGTTCGAGGAGAACAACCAGTTC
ATGGAGCACCCTGATCCCTTCAAGATTGGAGTCGAGCTCATGGAGACTGGCGGTCGACTT
TCGGAGGCTGCTCTGGCCTTCGAGGCAGCTGTTCAGAAGAACACTGAGCACGCCGAGGCT
TGGGGACGACTTGGAGCCTGCCAGGCCCAGAATGAAAAGGAGGACCCTGCTATCCGAGCT
CTGGAACGATGCATCAAGCTGGAGCCTGGTAACCTTTCTGCTCTGATGAACTTGTCTGTT
TCTTACACCAACGAAGGATACGAGAATGCCGCATATGCTACTCTGGAGCGATGGCTTGCC
ACCAAGTACCCCGAGGTTGTGGACCAGGCCCGAAACCAGGAGCCTCGACTCGGCAACGAG
GATAAGTTCCAGCTGCACTCTCGGGTCACTGAGCTGTTTATCCGAGCTGCCCAACTGTCC
CCTGACGGAGCTAACATTGACGCTGATGTCCAAGTTGGTCTCGGTGTTCTGTTCTACGGA
AACGAGGAATACGATAAGGCCATTGACTGTTTCAACGCCGCCATTGCTGTTCGACCCGAT
GATGCTCTTCTGTGGAATAGACTCGGAGCCACCCTTGCCAACTCCCACCGATCTGAGGAG
GCCATTGATGCTTACTACAAAGCTCTCGAGCTGCGTCCCTCTTTTGTGCGTGCTCGATAC
AACCTTGGTGTGTCGTGCATTAACATTGGCTGCTACAAGGAGGCTGCCCAGTATCTTCTG
GGGGCTCTGTCCATGCACAAGGTTGAGGGAGTCCAGGATGATGTTTTGGCCAACCAGTCC
ACTAACCTGTACGATACCCTGAAGCGAGTTTTCCTGGGTATGGACCGACGAGATCTGGTG
GCCAAGGTTGGAAACGGAATGGACGTCAACCAGTTCCGAAATGAGTTTGAATTTTAGTAT
ATAGTAATTGATTATTTAAGGATGAGCGAGATGAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F28457g_CDS-001

Protein length: 599 aa.
Product: Peroxisomal receptor for the C-terminal tripeptide signal sequence (PTS1) of peroxisomal matrix proteins
Gene: PEX5, PAY32

>YALI0F28457g_CDS-001 MSFMRGGSECSTGRNPLSQFTKHTAEDRSLQHDRVAGPSGGRVGGMRSNTGEMSQQDREM
MARFGAAGPEQSSFNYEQMRHELHNMGAQGGQIPQVPSQQGAANGGQWARDFGGQQTAPG
AAPQDAKNWNAEFQRGGSPAEAMQQQGPGPMQGGMGMGGMPMYGMARPMYSGMSANMAPQ
FQPQQANARVVELDEQNWEEQFKQMDSAVGKGKEVEEQTAETATATETVTETETTTEDKP
MDIKNMDFENIWKNLQVNVLDNMDEWLEETNSPAWERDFHEYTHNRPEFADYQFEENNQF
MEHPDPFKIGVELMETGGRLSEAALAFEAAVQKNTEHAEAWGRLGACQAQNEKEDPAIRA
LERCIKLEPGNLSALMNLSVSYTNEGYENAAYATLERWLATKYPEVVDQARNQEPRLGNE
DKFQLHSRVTELFIRAAQLSPDGANIDADVQVGLGVLFYGNEEYDKAIDCFNAAIAVRPD
DALLWNRLGATLANSHRSEEAIDAYYKALELRPSFVRARYNLGVSCINIGCYKEAAQYLL
GALSMHKVEGVQDDVLANQSTNLYDTLKRVFLGMDRRDLVAKVGNGMDVNQFRNEFEF*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG