YALI0F06402g

Overview

Description similar to uniprot|Q06156 Saccharomyces cerevisiae YLR272c YCS4 subunit of condensin
Locus type CDS
Locus tag YALI0F06402g

Location

Species Yarrowia lipolytica Positions 948366..951725
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 3360 (nuc.)
Previous locus YALI0F06380g Next locus YALI0F06424g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F06402g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F06402gYALI0F06402g_mRNA-001YALI0F06402g_CDS-001

Nucleotide sequence

 

>YALI0F06402g
ATGTCGGAATTCATTCTCAACGAGGTGTACACAGAGTATTTGGAGGACGCGCAGCAGTTG
GTGTCACGTGCCAACTCGCCCTCGGACTTCAACTACGCTGTCAACGAGCTCATTGAAGAT
GTCGCGGTCAACTCTTCTCAGATCTTTCACAACAACAATCTGACCACCACTTTCCAGATT
CTGCTCAATATCAGCGAACTGACTTCGCGGTCGCTCGGAAAACTCGCTGATTTGCTGCAA
ACGTGTTTTCGGGGAGCCTGCGAGTCTGCTTTGGAGGCTCTGGAGAGATCAGACTCGGAC
ATCTACTCACAGGTGCGCACCGAGGTGGAAGTATACGGATTCCTGGTGCAGTGGCTCATC
AGTGCATTGGCACACAAGGTGAGCACAGACGACAACTCTGGCGGCAAGGGACGGAGCAAG
AAGGACGTGGAGGTGGAGAATCTCAAACGGTACATTGTGGGTCTGATGGAGGCTTCAGCT
AACATTATGGATATTCAGCAGCTGAGAGCCATTTTTGGCACATCTCAGGACCACGACACG
TTCGCTGCCATGATTTGCAGAGCTGCTTACAGAGCTATTGAGACAGAGGCACTGGGTAAA
GATGCCAATGTTCGAGACGCCACTTTTGACGTGATCATCGCCGGCATAAAGTTCCAAAAC
CAGTCCAATATGGCCCATTCCATGCTACTACAGCATCTCAACTATTATGAGCACCTGTCT
GAGCCTGTGGCCGAACTACTGGCTCTCTTGTACAACCGAGAGAATGAAAGTGCAGTTTCC
GAAACCATCATTCTCGAGGTGTCTCAGATGCATTTCTCAAACACAGACTCCAAAGCGCCC
AAGGCAATTGCCATGTTTCTCGTCAAGCTATCTCAACTGGCTCCCAAATTGGTACTCAAG
CAAATGGCTGTGTTGCGACGCCTTCTTGAATCTGATTCATATGCGATTCGAAACGGAATT
GTTGACTCCTGCAGTCAGATTGTGGTCAGCATTTCTACAACAGGTGACGACGGAGAGCAC
TATCGGTCGCAAATTGAGGGTGTCCTTGAACTGGTTGAAGAGCGTATCCTCGATGTGAGT
CCGTACGTTCGATCCCGAGTATTACAACTGTTCTCCAACGTCTGTGACCTCGAAGTGCGG
TTCAACGCTCATTTCCAACAAACTGCAAACATGGCAGTGGAGTGTTTGAACGATAAGTCT
GGTCTCGTGCGTGGACGAGCAGCCAAATTGCTCCAAAAGCTTGTAACCACACATCCCTTC
AAGGCTCTACATGGTGCTCAGCTCAACATGGGCGTGTGGAAAGATAGACTTGCCGGAATT
GAGGTAGAAATCACAGATCTGGAGAAATCTATGCCTGCCGAAGTGAATGGAGCTTATTTG
GACCCTCCCAGTGACGACGAGGGCGAACATGCTGCCCAGAATGATGTTTCCGAGAACCTG
GAGAAGCTCAAGAAGCTGCAGCTGACCCAAACGTACTATAAGGACGCCATCAAATTCATG
ACAGTGATGAAACGCGCATTTGACCAGGCAGAGGTGCTGCTCTTCTCCAAGGTCAAGACC
GAGGTCATGGAGATGATGGACATGTTTGTTCTGGCAGACGCATACAACTTTGAGGGAGCC
AGCAGCGGTATCAGAAAGATGCTGCACGTGATTTGGACCAAGGGTAACTCTGATGAGGGT
AAGGAGGTGCAGGCGAGACTGTTGTCTGCCTACTCGAAGCTCTTCTTTGAGGCTCCTCTC
TCCATTCCCGATGCTGAGGCATCAATGTACATTGCTCGAAACCTGATTTCGCTGACTTAC
GGAGCTACTCTCGCTGAGTTGGCTTCTCTGGAACGTCTACTTTGTGTGGCAATGGAGAAG
GGGATTATCAATGCTCTGGTGGTCCGAAAGCTTTGGCAGACGTTTGGATACACCCAGGGG
GCCATTTCGCGGTCTCAGCGTCGAGGTGCAGTCATTGTTCTCGGTATGCTTGCGCAGGCT
GACGCTGAAATTATCAACGTGGGTCTGGAGACTCTGCTGTCTGTGGGACTCGGCGCCTTT
GGCCAGAAGGATCTCGTGCTTGCCAAGTACGCCTGTGTGGCTCTGCAGCGTCTAGGTGGC
GACCCCAAACTCAAGGCGTCTATGTCGAGCGATTCTGCCGTCATTACCGCGCTCATGAGC
ATCGTGGAGCATTATACGGAGGATCTGGAGTGGTTTGACGTGGCCGCTCAGTCTCTGAAC
GCCATATTCATCCTTGCTGAATCGCCTGAGGAGGTTACGTCTGAGATCATTCGGCGAAAG
ACCATCAGTACATTCTCCGAAGGATCCTCAGGTCTCAGAGATATTAAGCTGAGTCAGCTG
CTTGTTGTCGTAGGCCATGCTGCCATCAAGCTCATTGTGTACCTTGAGGCCAAGGAGCTT
GAGTTCAAGCGACTCAAGGTGATGGTTGAAAAGGCCAAGAGTGGAGAGGCTGGTGGTGAT
GATGATATGGAGCAGATTGGTGGCACTTCTGAGGATGACTTTTCGGAAATTATCACGTCC
GTGCGAGAGCGGGAGATTCTGTACGGAGACAACTCTTTGTTGGCACAGTTCGGACCTCTA
GTTGTGGAAGTGTGTTCCAACAACTTGAAATATTCCTCTGAAACCCTTCAGATTGCTGCG
TCATCGTGCCTCTCCAAGCTCATGTGTGTTTCTCCTCTCTTCTGTCAGCAGTCGCTTCCT
CTGTTGATCACCATCATGGAGAAGTCCGAGAACCCCATCATCCGAAGTAACGCTGTGATT
GCTCTTGGAGACATGACCATTTGCTTCAACCACTTGCTGGACGAAAACACCAATTATCTC
TACGAGCGTCTTCACGACTCTTCTCCCATGGTGCAGCGAACCACGCTAATGACTCTGACG
TTCCTCATTCTCGCTGGTCAGGTCAAGGTCAAGGGACAGCTGGGAGAGATGGCCAAGTGT
CTGGAGAACCCTGACAAGCGTATTTCCGACCTGTCGCGAATGTTTTTCACTGAGCTGGCC
ACCAAGGACAATGCCATCTACAACGGCTACATTGATATCTTTTCTGTTCTGTCTGCTGAT
GAGGAATTGTCTGATGACCAGCTTAAGCGGGTTATTCGGTTTCTTACTTCGTTTGTCGAG
AAGGAGAGACATGTCAAGCAGCTGTCCGATAAGTTGTTTGCTCGACTCGGACGCTGCGAG
ACGGAGAAGCAGTGGAAGGACGTATCGTTTGCCTTGGGTCTGCTGCCTCATAAAAATGAG
AGTATTCAGGGTGTCATTGCCGAGGGTTTCAAGGTGGTGGGTAAGGTCTAATCAACAGTG
TAGCACTGTGACTACTCTAAGTGTTATGGCTATGTAATTTTATATTTATTGTGTTACTTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F06402g_CDS-001

Protein length: 1097 aa.
Product: Subunit of the condensin complex, putative

>YALI0F06402g_CDS-001 MSEFILNEVYTEYLEDAQQLVSRANSPSDFNYAVNELIEDVAVNSSQIFHNNNLTTTFQI
LLNISELTSRSLGKLADLLQTCFRGACESALEALERSDSDIYSQVRTEVEVYGFLVQWLI
SALAHKVSTDDNSGGKGRSKKDVEVENLKRYIVGLMEASANIMDIQQLRAIFGTSQDHDT
FAAMICRAAYRAIETEALGKDANVRDATFDVIIAGIKFQNQSNMAHSMLLQHLNYYEHLS
EPVAELLALLYNRENESAVSETIILEVSQMHFSNTDSKAPKAIAMFLVKLSQLAPKLVLK
QMAVLRRLLESDSYAIRNGIVDSCSQIVVSISTTGDDGEHYRSQIEGVLELVEERILDVS
PYVRSRVLQLFSNVCDLEVRFNAHFQQTANMAVECLNDKSGLVRGRAAKLLQKLVTTHPF
KALHGAQLNMGVWKDRLAGIEVEITDLEKSMPAEVNGAYLDPPSDDEGEHAAQNDVSENL
EKLKKLQLTQTYYKDAIKFMTVMKRAFDQAEVLLFSKVKTEVMEMMDMFVLADAYNFEGA
SSGIRKMLHVIWTKGNSDEGKEVQARLLSAYSKLFFEAPLSIPDAEASMYIARNLISLTY
GATLAELASLERLLCVAMEKGIINALVVRKLWQTFGYTQGAISRSQRRGAVIVLGMLAQA
DAEIINVGLETLLSVGLGAFGQKDLVLAKYACVALQRLGGDPKLKASMSSDSAVITALMS
IVEHYTEDLEWFDVAAQSLNAIFILAESPEEVTSEIIRRKTISTFSEGSSGLRDIKLSQL
LVVVGHAAIKLIVYLEAKELEFKRLKVMVEKAKSGEAGGDDDMEQIGGTSEDDFSEIITS
VREREILYGDNSLLAQFGPLVVEVCSNNLKYSSETLQIAASSCLSKLMCVSPLFCQQSLP
LLITIMEKSENPIIRSNAVIALGDMTICFNHLLDENTNYLYERLHDSSPMVQRTTLMTLT
FLILAGQVKVKGQLGEMAKCLENPDKRISDLSRMFFTELATKDNAIYNGYIDIFSVLSAD
EELSDDQLKRVIRFLTSFVEKERHVKQLSDKLFARLGRCETEKQWKDVSFALGLLPHKNE
SIQGVIAEGFKVVGKV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG