YALI0D21384g

Overview

Description weakly similar to uniprot|Q08387 Saccharomyces cerevisiae YOR005c DNL4 DNA ligase IV
Locus type CDS
Locus tag YALI0D21384g

Location

Species Yarrowia lipolytica Positions 2708478..2711436
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2959 (nuc.)
Previous locus YALI0D21362g Next locus YALI0D21406g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D21384g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D21384gYALI0D21384g_mRNA-001YALI0D21384g_CDS-001

Nucleotide sequence

 

>YALI0D21384g
ATGTCGAGCGAGCGGCGACCCGAGCTGGAAGAAACTGCCGTTGACCCGGCAACGGGCTCT
GCGGCGTCTCGAAAGTTTTCCATTGTCCAGGACGCGGTGGAAACGACAATTGTGGCACCG
ACCAACCATGGGCCCTCTCCTCGGTTTTCCACTCTCGTCCGCAACCTGTTCGAGCCGCTG
GTCAATCTCTCGGCCGTGGTTGCAGCTCTGCGCAAGAAACCGACCGAGGCCAAGGCTCAC
ATTGCCTCTCAGTTCATCAAGGGGTGGGTAGAGGAGGTTGGCAAGGACATTTATCCTGCC
TTCCGTCTCATCTTACCGGACAAAGACCGAGAACGGGCCGTGTACGGGCTCAAGGAAAAG
GCGCTGGGCCGTCTGTGGGTCAAGGTGCTCAATTTGGCCAAAGATTCGCCCGATGCCAAG
GCGTTGAGTGAATGGAAACAAGGAGGCAACGAAAGCGCCGGCAACTTCTCCAAACGGTGC
TACGAAGTGCTGAGCAAGCGAACCAGTCTTACCGACTACGGCCATATGACCGTGGACGAG
GTCAATGAGCGACTGGATCTTTTGGCCGACGGAGAAACGGACCAGGCCAAGCAGATTGAG
ATTCTAACCTACTTCTACAAGCACATGAACGCCACGGAGCTCAAATGGCTGGTGAATATC
ATTTTGCGGCAGATGAAGATGAACGCGACGGAAAAGGTGTTTTTTGAGCCCTGGCATCCC
GATGCCGAGTCCTTGTTCAACGTCACTGCCAGTTTGAAACGCGTCTGCTGGGAATTGACA
GATCCTACTAAACGGCTGACTTCCGCAGAGGCCCAAGTGTCGTTATTCGCCTGTTTCATG
CCGCAAATCGCCGCGTTTCCGAAATACTCGGGCCAGGACATTGCCGGAAAACACTTCAAG
GGCAGACCGTTCTACATTGAAGAAAAGATTGACGGAGAGAGAATGCAGATGCACATGAGC
GAATATGGCAACAAGTTCCACTGGTGGAGCAGACGGTCCAAGGACTTCACCGAGACGTAT
GGAAACTCTCTGGATGACGCTTCTGGCTCTCTGACCAAACGTCTTAGAGGTATCATCAAC
CCCAAAGTCAGAAACTGTGTGCTGGACGGCGAAATGGTGGCTTATGATCCTGCCACCAAG
AAGATTATCCCGTTTGGAACTCTGAGAACGGCCAACCGAAACGAACAGAACGACCTGAAC
CTCACTAAACCCATGTTCATGGTATTTGACATTCTTTTACTCAACGATAAGCCTCTGGTG
GACTACACTCTAGCTGAGCGCAAGAGAACACTTCGGACCATCTTTGCAAGGACTGATAAC
GAGACTGTGGGTCAGGAAGGAGTTCTGGAAGTGTTACCCTACACCGAGGCCACCACCGCT
GCTGAAATCGAGACTTGCATGCGAAAGATCATTGCAGAGTCGTCCGAAGGACTGGTCATC
AAAGACCCTACTTCTGTCTACAGGGTGAACACTCGAGACGATTCGTGGCTGAAAATGAAA
CCTGAGTACATGTCTGAATTCGGCGAGAAGCTCGATGTTGTCATTATTGGAGGCTACTAC
GGTTCAGGAAAACGAGGCAGTATTCTTTCCTCGTATCTTTGCGGTCTTCGGGCTGATGGA
TCGGACCAGTTTTGGTCCTTTTTCAAAGTGGGGGGTGGCCTGACTGCGGGTGACTACCAG
GCTATTCGCACCAAGACCGAGGGCAAATGGAAACGATGGGACAAGAACGACAAGCCCAAA
AACGTGCTTCTGGCGGGCCCCAATGGCGACCTAGAACGTCCAGATGTCTGGATCGAGCCG
TCGGACAGTGTGGTGGTCGAGGTCAAGGCTGCTTCAGTAGTTGCTAGTGACCAGTACAAG
GTGGGGTTGTGTCTGCGGTTTCCTAGATTCCGAGCCCTGCGACTGGATAAGACATGGGAA
GACGGACTGACCATTTCTCAGTTTGCGGAGCTCAGACAAACAGTTGAAATGGAGGCTGAA
AACAAGGAGTTGGAGCTGGAGGACAGAAAGAGACGCAATGCAGGTCCCGGAAGAGGGGCC
AAACGGCTGAAACTGGCAAACGTGTCTTCTGACGAAGACGAGCTGGGTACTGATGAAAGG
CCGACGTCTGTTTTCAAAGCCACGTCTTTTGCTGTGCTCTCAGACATGTCTTCTCCTCGG
TACATGTCTAAAGCCGCGGTGGAAAATCTCATCAAGAAGCACGGAGGTACTGTGTTTCAG
ACGGTCGAAGGACCACACACGATTCCCGTTGCAGACACCCGAACTATCAAGGTCCAGGCT
CTGACTAAACGGGTCCATGGTGTGGATGTGATTCGACCCAACTGGCTGTTGGATTGCATC
AACGAGGAGAAACTAGTGGCTCTGGAGCCGCGAAATCTGCTGGAGTCGAGTGCCGAAACA
CTTGCACTTGCCAAGACAAATGTCGACGAGTTTGGAGACAGTTACACCCGCCCTCTGACC
TACAAAGAGATGCAGGAGGTGTTGCGGTTCATGGACCAGTTTGATCTGGATCAAACAAAC
CCCCCTGACTTGATGATGGAGGTTCTGGAAACCAATGATGGAGCCGTGCCCAAGGGAATG
CTCTTCTATGGCAAAAAGGTGTACATGTCGACTTCCAATATGGACACTGTTGCTCTGGAG
ACCCAGTTCAGAGCCTACGACGCCTTGAGATGCCTGCAATTTGGAGGAGCCAATCTCGTG
ACCGACATGAAAGACCTGGTGGTGGCGGTTGCCAAAACGGAAGAGGAGGCTAAAGAGCTG
AGAAGGGTGTCCTCGGAACAGGTGTTTCCGTTCAGAGTGGTGTCCATCAAGTGGGTCGAG
GAGAGCTGGAAGAACGGAACGGTGGAGATTGAGGACGATTACCCTCTATAACCCTTCAAA
TAACACTCCATATGGAAGAAATACACCTGCAATCAAACTACTCGTATTCTAGCCGTCAAT
ATCATTTTCATTACTCATT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D21384g_CDS-001

Protein length: 957 aa.
Product: Conserved hypothetical protein

>YALI0D21384g_CDS-001 MSSERRPELEETAVDPATGSAASRKFSIVQDAVETTIVAPTNHGPSPRFSTLVRNLFEPL
VNLSAVVAALRKKPTEAKAHIASQFIKGWVEEVGKDIYPAFRLILPDKDRERAVYGLKEK
ALGRLWVKVLNLAKDSPDAKALSEWKQGGNESAGNFSKRCYEVLSKRTSLTDYGHMTVDE
VNERLDLLADGETDQAKQIEILTYFYKHMNATELKWLVNIILRQMKMNATEKVFFEPWHP
DAESLFNVTASLKRVCWELTDPTKRLTSAEAQVSLFACFMPQIAAFPKYSGQDIAGKHFK
GRPFYIEEKIDGERMQMHMSEYGNKFHWWSRRSKDFTETYGNSLDDASGSLTKRLRGIIN
PKVRNCVLDGEMVAYDPATKKIIPFGTLRTANRNEQNDLNLTKPMFMVFDILLLNDKPLV
DYTLAERKRTLRTIFARTDNETVGQEGVLEVLPYTEATTAAEIETCMRKIIAESSEGLVI
KDPTSVYRVNTRDDSWLKMKPEYMSEFGEKLDVVIIGGYYGSGKRGSILSSYLCGLRADG
SDQFWSFFKVGGGLTAGDYQAIRTKTEGKWKRWDKNDKPKNVLLAGPNGDLERPDVWIEP
SDSVVVEVKAASVVASDQYKVGLCLRFPRFRALRLDKTWEDGLTISQFAELRQTVEMEAE
NKELELEDRKRRNAGPGRGAKRLKLANVSSDEDELGTDERPTSVFKATSFAVLSDMSSPR
YMSKAAVENLIKKHGGTVFQTVEGPHTIPVADTRTIKVQALTKRVHGVDVIRPNWLLDCI
NEEKLVALEPRNLLESSAETLALAKTNVDEFGDSYTRPLTYKEMQEVLRFMDQFDLDQTN
PPDLMMEVLETNDGAVPKGMLFYGKKVYMSTSNMDTVALETQFRAYDALRCLQFGGANLV
TDMKDLVVAVAKTEEEAKELRRVSSEQVFPFRVVSIKWVEESWKNGTVEIEDDYPL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG