YALI0D21362g

Overview

Description similar to uniprot|P32913 Saccharomyces cerevisiae YOR132w VPS17 vacuolar protein sorting-associated protein singleton
Locus type CDS
Locus tag YALI0D21362g

Location

Species Yarrowia lipolytica Positions 2706648..2708509
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1862 (nuc.)
Previous locus YALI0D21351g Next locus YALI0D21384g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D21362g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D21362gYALI0D21362g_mRNA-001YALI0D21362g_CDS-001

Nucleotide sequence

 

>YALI0D21362g
ATGGCTTCTGCAGTGCCCTACAATCCGGACGGGTTTGATAATCCGTTTGCGGAGAGTGAA
AACGGACACGGTGTCCTCAACAACCACGACGATGACAAGGGAAATGTTGGCGGGGCTGGC
GAGGCGGATGAGACGTCCAATGCGGTTTACGAAGAGGAGCCTGCCGACGACAACAAGCCG
TTTGTGGGTGAGGACGGTGATGACGACGCGCATGACGTTGGCAGCGTCAGTGTTCATGGG
GGGTTTGGCGAGCAGGGGGCTCACGACACGGCAGAGAGCGCAAGCGACCAAGTCGTCAGT
GGCGACAATGCTGCTGACAGTGCTGCTGTCGACGGCGCTGCCCCTGCCCCTGCCGACGGA
GCCACCGATGCTGATGCCATCTCCGCCACCAAGCCTGCTGACGGCGAAACGAAAAAGCCG
GTCAAGCGGTTCCTCAAGATCCGAGTCATGGCAATAGAGCCCGGCAAAACCATCATCTAT
CGCCTTGAAGGCACCACCAACTTCCCCAAGTACCGCACCTCGCACTATCGAGACATCCGG
CGCACCCACGGCGAGTTCGTCGCGCTGTTTGAGCATCTCAACGGCGCCAACGCGGAGTGC
TTTGTGCCTGCTGTCCCCGCGCTGCCTTCCGGATCTATCGGCAACTCTAACAACACCCAT
GCCGCCGAACAGGCCCGCAAGGTGATGCAGACTTGGCTGGATCGGGTCTGTGGCGACCCC
ATCTTGTGTCGCGACGACGAAATGCGCTTTTTCGTGGAGGCCGACTTTGGTTACAGCCCC
AACGTAAAGCGACGACCCCCCGCCACCGGTCTCAAGCGAAAGGCCATGAAGCAGTGGGCT
CCCCCCTTAGACGACAATGCTGAGCTCCGTGACTTCCGACCGGTGGTCAAGGCTCTCTAC
AATACTGGATCCGATACAGTGTCCAAGTACGAACGCCAATGCAAGATTGAGCGGCAACTT
GCCCTCGGTCTGGCCGAGCTAGGCCACAAGACCATTGCCTGTGGCGACGTACTGAACCCC
GGCGCAGCAGCTCTGCGGTCCCGTGATCTGGGCCCTGTCTTTGCCGCATTCGGCCAGGCA
CTTGTGTCTGTGTCTGACATTGCTTACGCGCGAGCTGCTGTCCAGATTGCATCGTTTGTG
GATCCCCTCGATCTAGTGTCCCAGACCGGCTACGTGGCCAAGGAGCAGCTGACCAACCGG
CACTTGCTGATGCGGGAGTTAGAGACTCTGCAAACCAATGCCAAGAACAAGCATATTGCC
GCTGAGCGCATCAAAATCTCCGGCCAGCACAACCCCCACAAGGTCGATGAGGCCATTGCT
CTGTACGAGGAGGCTACGCGGGCCGAGACTCGGCTCTCGAACCGTCTCAAGCGCATTTCC
GACGCCTTGTGTATCGGCAAGACCAAGCTGACCAAGAACGTCGAGGAGGATCTCACCCAG
GCCGTGCGGGAAGTGACCCAGCGGGTCATTGAGTGCGAGCGAAGGACGCTTGCTGTGTGG
GAAAACATCCGAGGCGATGTCCGGGCTGCCGACGGAGCTCGGGGCGGTCTTTCTCGTCTT
GGCAGAAAGCGGGTGGGTGCTTCTCAGGCCCAGACCCGGTCCCAGGGCCCTGGAGGCGAT
GCTTGGTCGGGAGACCGAAAGGTGCGAGCCGAGGATCAGGACCAGGAGGTAGATGAGGGC
GATCTGGACGAGAGCAGGGTGGATGCCAAGATGGCAGCATCGTTGCTTGGTGGAAGCACC
TTTTAGCGTGGCTTATTGTAGACGCCGTGTCCACATATTACACGTTCTGCTCCGCATCCG
GGATAAAATGATTGATGACAATGTATGAATAATGAGTAATGAAAATGATATTGACGGCTA
GA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D21362g_CDS-001

Protein length: 582 aa.
Product: Subunit of the membrane-associated retromer complex, putative

>YALI0D21362g_CDS-001 MASAVPYNPDGFDNPFAESENGHGVLNNHDDDKGNVGGAGEADETSNAVYEEEPADDNKP
FVGEDGDDDAHDVGSVSVHGGFGEQGAHDTAESASDQVVSGDNAADSAAVDGAAPAPADG
ATDADAISATKPADGETKKPVKRFLKIRVMAIEPGKTIIYRLEGTTNFPKYRTSHYRDIR
RTHGEFVALFEHLNGANAECFVPAVPALPSGSIGNSNNTHAAEQARKVMQTWLDRVCGDP
ILCRDDEMRFFVEADFGYSPNVKRRPPATGLKRKAMKQWAPPLDDNAELRDFRPVVKALY
NTGSDTVSKYERQCKIERQLALGLAELGHKTIACGDVLNPGAAALRSRDLGPVFAAFGQA
LVSVSDIAYARAAVQIASFVDPLDLVSQTGYVAKEQLTNRHLLMRELETLQTNAKNKHIA
AERIKISGQHNPHKVDEAIALYEEATRAETRLSNRLKRISDALCIGKTKLTKNVEEDLTQ
AVREVTQRVIECERRTLAVWENIRGDVRAADGARGGLSRLGRKRVGASQAQTRSQGPGGD
AWSGDRKVRAEDQDQEVDEGDLDESRVDAKMAASLLGGSTF*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG