YALI0F31757t - Ylli_pol

Overview

Description Ylli relics, ENA|AJ319752 Yarrowia lipolytica LINE retrotransposon Ylli
Locus type mobile_element
Gene name Ylli_pol
Locus tag YALI0F31757t
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 3937572..3938285
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 714 (nuc.)
Previous locus YALI0F31735g Next locus YALI0F31779r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F31757t oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F31757tYALI0F31757t_mRNA-001YALI0F31757t_CDS-001

Nucleotide sequence

 

>YALI0F31757t
TCAGTCGTTCAGCTCAGACCAGCGGAGAGGACGAAAGTTGACCTGTTCGAATGCCAACGC
CGTGAAAACCCGATCGCAACCATGTCTCGGGAGCAAGTTGCATATCTCGAGTCGCAAATC
GATGTCCCTGTCAAGGTGGCAAAGGATAGCTGGCGAGATCGTTTCAAGGTCATGAAGAAC
AAGCACTGGTTGGAGACACTGCCATCCGAGCTTGATCCGAACCACCTACACTGGCTTAAG
ACAAATCAGTTCCTGAGCAAGCACTACCGACGTGATGATAAGAGCGCTGCTACGCTACAC
ATGTTGCGGCTGAACCGCCTCCCCTTCACCCGGTGGTACCCTAGATCAAGATCTGTCCAG
TACAGAGACCTTGGATGTAGTTCTTGTCAACTCTTCAAACAGAAGAACTACCTCCATGAG
CACCTTTTTGTCAATTGTCCAGCGTCCAAGGCCATCTGCCAGAAGATTGGTGTCCCCCTT
CCATCAAAGATGGCGGACTGGATCTTACTGGAAGCCAAGGACGGCCCGCTGAACTACATT
AGAGAGCTCGCCCATGCTTTGTGGCAGTTCGAGCGAGCTATGCGAAAAACTGGCCTAGTG
GGTACTGACCCCGTGGTCCAGCGAGACTTCGCTCACTTGTTCACCCGAGCTTCTGCAGCA
TATCGTCGCGACATGGTGATCGTGGCTATGAGGCGGAAGCGCGGAGAGGAATGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F31757t_CDS-001

Protein length: 238 aa.
Gene: Ylli_pol

>YALI0F31757t_CDS-001 SVVQLRPAERTKVDLFECQRRENPIATMSREQVAYLESQIDVPVKVAKDSWRDRFKVMKN
KHWLETLPSELDPNHLHWLKTNQFLSKHYRRDDKSAATLHMLRLNRLPFTRWYPRSRSVQ
YRDLGCSSCQLFKQKNYLHEHLFVNCPASKAICQKIGVPLPSKMADWILLEAKDGPLNYI
RELAHALWQFERAMRKTGLVGTDPVVQRDFAHLFTRASAAYRRDMVIVAMRRKRGEE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG