YALI0F30173g

Overview

Description similar to uniprot|Q02939 Saccharomyces cerevisiae YPL122c TFB2 TFIIH subunit (transcription/repair factor)
Locus type CDS
Locus tag YALI0F30173g

Location

Species Yarrowia lipolytica Positions 3774939..3776416
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1478 (nuc.)
Previous locus YALI0F30151g Next locus YALI0F30195g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F30173g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F30173gYALI0F30173g_mRNA-001YALI0F30173g_CDS-001

Nucleotide sequence

 

>YALI0F30173g
ATGACGAGCCAGTTCAAAAACAGCATCAATGACTACCTGGAAGGTCTTCCGGAGGCAGTA
CTAACTCGGCTGTACCAGTCTCCGGCCACATGTCTGGCGGTGTTCCGACTGCTACCTGCT
CTGGCAAGAACACTCATCATGGGCATGATTTTCAACCCCGATCCCATAGCAGTAGCCGAC
GTCGACGCTCTGGTGAAGCCTTCAAGTCAGCGACTCAAGCTCGAAACACAGAAGAAACTG
CGACTGCTCCACATTTTCACAGAGACCCAGGCCCATATCATCATTAATCCGACATTCAAA
AAGAACCTGAGGGCAGCTCTGGTAGGAGGAGACCAGAACATTTCGTTTGGAGTGCCCTGC
GACACGGAAGACAAACACAAGGTGGATGTGGCGTTTTTGGATGCTCACGCTGTCTCTCAA
TGGGAGATGATCTTACATTTTATGGTCGGAACGTCGATTGGAAGAACACCCAGTGATGGA
GTGCTCAACCTGCTGAAGCACAGTGGACTTATGGAACCCGAACGGGGAGGACTGAGAATC
ACCAATGCAGGATTCCAGTTCTTGCTACAGGATGTAAATGCTCAGATTTGGACACTGTTG
CTCCAGTATCTCAACATGTCCGAGTATCTGCAGATGGATCCTGTAGACGTGCTCAACTTC
ATTTTCATGCTAGGTTCTCTCGAGCTAGGCCAGGACTACTCGCTCAGTGCACTCTCCGAG
ACACAGAAACACATGCTGGAGGATCTGCGGGATTACGGTATCGTCTACCAGCGAAAAGCA
TCGTCTAGACGATTCTATCCTACGCGACTGGCTACTACTCTGACATCAGAAACGGCTGCA
CTTAGAACAGCCAGTCAGAGCATGGAAGCAGCTACACAAGACACAATTTCGTCTTCTGTT
GCTGCCGACTCTGGATTTATCATTCTGGAAACTAATTTCAGACTCTACGCCTACACAGAG
TCTCCACTACAGATCGCAGTACTGAACCTTTTTGTCAATCTTAAGACACGATTTGCAAAC
ATGGTTACCGGTCAGATCAACCGAGACTCGGTTCGATTTGCGCTCTCAAACGGTATTACT
GCCGAACAAATCATCACATATCTCTCTGTTCATGCACACCCACGTATGAAGGGGATGGAA
CACGTTCTTCCCCCTACTGTGGTGGATCAGATCAAACTGTGGCAACTTGAGATGGACAGA
ATCCGAGCCACCGACGGTTACTTGTTCTCCGAGTTCAAAAACTTTGACGAGTACAAGGAT
GTCTCCACTTATGCCAAGGAGCTGGGCGTTCTCTTGTATGAGAATCCTGGAAAGCGAAAG
TTCGTGTCTACGCTTGCTGGTTCTCAGCAGATTGTTGAGTTTGTCAAACGACGAAATCAA
AAGCACCGTAGCTCCGCAAACTGACCAACTAGAAATTGACCATCAAAACCATAGCATATA
ATAGATCGCACTAATAAAACAAGCGATGTCAACGTTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F30173g_CDS-001

Protein length: 468 aa.
Product: Subunit of TFIIH and nucleotide excision repair factor 3 complexes, putative

>YALI0F30173g_CDS-001 MTSQFKNSINDYLEGLPEAVLTRLYQSPATCLAVFRLLPALARTLIMGMIFNPDPIAVAD
VDALVKPSSQRLKLETQKKLRLLHIFTETQAHIIINPTFKKNLRAALVGGDQNISFGVPC
DTEDKHKVDVAFLDAHAVSQWEMILHFMVGTSIGRTPSDGVLNLLKHSGLMEPERGGLRI
TNAGFQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSE
TQKHMLEDLRDYGIVYQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSV
AADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGIT
AEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKD
VSTYAKELGVLLYENPGKRKFVSTLAGSQQIVEFVKRRNQKHRSSAN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG