YALI0F28501g

Overview

Description similar to uniprot|Q02821 Saccharomyces cerevisiae YNL189w SRP1 karyopherin-alpha or importin
Locus type CDS
Locus tag YALI0F28501g

Location

Species Yarrowia lipolytica Positions 3622350..3624136
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1787 (nuc.)
Previous locus YALI0F28479g Next locus YALI0F28523g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F28501g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F28501gYALI0F28501g_mRNA-001YALI0F28501g_CDS-001

Nucleotide sequence

 

>YALI0F28501g
ATGAGCGAGAAATTTGTGCCCGAGCACCGAAAGACGGATTTCAAGGACAAGAACAAATTC
AGCGCCGACGAGCTGCGACGACGACGAGATGAGGCCCAGGTCGAAATCCGAAAGGCCCGA
CGAGAGGAACAGCTGTCCAAGCGACGAAACATGAGCGAGCTGGTGGGCGGAGACGACTCA
GAGGACGAGGCCGAGTCTGCTTCCTCTAACCTCCAGTGGCAGGATGCTTTCCCCGAGATG
ATTGCCAACATTCAGAGCAACAACCTCGAGGCCCAGCTGGATGCCACCACCAAGTTCCGA
AAGCTGCTCTCCAAGGAGCGATCGCCACCCATTAACGAGGTGATCCAGTGCGACGTGGTC
AAGTACTTTGTCGAGTTCCTCAAGTCCCCCCATAACCTGCTGCAATTCGAGGCCGCATGG
GCTCTGACCAACATCGCTTCCGGTACCAGCGAACAAACCAAGGTTGTGGTTGATTCCGGA
GCTGTGCCTCTGTTTGTGCACCTCCTGGACTCTCCCGAGACCAATGTGCGAGAGCAGGCC
GTGTGGGCTCTCGGTAACATTGCCGGTGACTCCCCTCAGTGCCGAGATTACGTTCTCAAG
TGCGACGCTCTCCAGCCTCTCATCAACATTGCCACAAACACCAAGAAGCTCTCCATGATC
AGAAACGCCACATGGACTCTGTCCAACTTCTGCCGAGGCAAGTACCCCCAGCCCGACTGG
GAGGTTATCAAGCACGCTCTTCCTGCTCTCGCCAAGCTCATCTTCTCCTATGACGATGAG
GTTCTTATCGATGCCTGCTGGGCCATCTCCTACCTGTCCGACGGCACCACCAACAAAATT
CAGGCCGTTGTGGACGCCGGAATCCCCCGACGACTCATTGAGCTCCTCGGCCACCAGAGC
ACATCTGTCCAGACCCCTGCTCTGCGATCCGTTGGTAACATTGTCACTGGTGATGACGTC
CAGACCCAGATTGTCATTAACGCCGGTGCCCTGCCCGCTCTTCTGCAGCTTCTGACTGCG
CCTAAGGACTCTATTCGAAAGGAGGCCTGCTGGACCATTTCCAACATTACCGCTGGTAAC
TCCACCCAGATCCAGTCTGTCATTGACAGCAACCTTATCCCCCCACTTATCCAGCTCCTG
TCCACCGGAGAGGTCAAGACCAAAAAGGAGGCATGCTGGGCCATCTCCAACGCCACCTCC
GGTGGTCTTTCCAAGCCCGACCAGATCCGATACCTTGTCCAGCAGGGCTGTATTAAGCCT
CTGTGTGACCTGCTGGGTTCCATGGACAACAAGATCATTCAGATTTCTCTTGACGCTCTT
GAAAACATTCTCCGAGTGGGTGAGTCCGATCGACACATGCGAGGTGATGGCCAGAACGAG
TACGCTCTGTTCATCGAGGACGCTGATGGAATGGAGGCCATCCATGCTTGCCAGCAGAAC
GACAACGAGGCCATCTACAAGAAGGCTTACACCATCATCGAGACCTATTTCAGTGGTGAC
GAGGGTGTGGACGACACTGACCTCGCTCCTCAGACCGAGGGTGATGCATTTGCATTTGGT
GGCCAGCAGCAGCAGGGTTCCTTCAACTTCCAGTAGATACCAGGTAAGGAACTAAACGAA
CGGGAATGGCGATGAAAGTAGGATATCAATGTAGTAATAGATTGGAGTAGTACGACAGTC
ATGTGTGATGGAATTAGGCGGTGTAGGCCGCTCTAAGAAGCCTGTTGTGGAGCTGGATTT
AACCTCACGGGAAGTAAATCGCGAGGGAATATATATCTGTGTTTGTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F28501g_CDS-001

Protein length: 532 aa.
Product: Karyopherin alpha homolog, putative

>YALI0F28501g_CDS-001 MSEKFVPEHRKTDFKDKNKFSADELRRRRDEAQVEIRKARREEQLSKRRNMSELVGGDDS
EDEAESASSNLQWQDAFPEMIANIQSNNLEAQLDATTKFRKLLSKERSPPINEVIQCDVV
KYFVEFLKSPHNLLQFEAAWALTNIASGTSEQTKVVVDSGAVPLFVHLLDSPETNVREQA
VWALGNIAGDSPQCRDYVLKCDALQPLINIATNTKKLSMIRNATWTLSNFCRGKYPQPDW
EVIKHALPALAKLIFSYDDEVLIDACWAISYLSDGTTNKIQAVVDAGIPRRLIELLGHQS
TSVQTPALRSVGNIVTGDDVQTQIVINAGALPALLQLLTAPKDSIRKEACWTISNITAGN
STQIQSVIDSNLIPPLIQLLSTGEVKTKKEACWAISNATSGGLSKPDQIRYLVQQGCIKP
LCDLLGSMDNKIIQISLDALENILRVGESDRHMRGDGQNEYALFIEDADGMEAIHACQQN
DNEAIYKKAYTIIETYFSGDEGVDDTDLAPQTEGDAFAFGGQQQQGSFNFQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG