YALI0F25421g

Overview

Description weakly similar to uniprot|F2SKB2 Trichophyton rubrum pre-mRNA splicing factor cwc15
Locus type CDS
Locus tag YALI0F25421g

Location

Species Yarrowia lipolytica Positions 3267587..3268365
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 779 (nuc.)
Previous locus YALI0F25399g Next locus YALI0F25443g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F25421g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F25421gYALI0F25421g_mRNA-001YALI0F25421g_CDS-001

Nucleotide sequence

 

>YALI0F25421g
ATGACTACAGCACATCGACCTACTTTTGACCCAGCACGAGGCAAGTCCAATACCCAGGCC
GCTGGGTCCATCTCACATACCCGGTCCCTCCCGTCTCACACCAAGCTCAAGTACAGATAT
GCTCGGATTAGTACAAACACAGATGCCATGAGAAAGACTCTGTTGGAGAATGAGGGGGGA
CTCAAGCAGGCCGCCACGAAGCTAGTTGCTGAGCAGCAGCAGGCAGAAACTCAGGTTCAA
GACTCTGAGAAAGAACTTTCCGATGAAGTGAAGGCCAAGATCATTGAGGAGAACCGAGAT
GACGATGACTCTGGGTCTGACGATGAGGAGTCCGATTCAGACGACTCGGACTCAGACTCA
GATGACGAAGACGAGCTGCTTAGAATCGAACTCGAGCGAATCAAGCAGGAACGAGCACAG
GCGAAGGCTCGAGAAGAGGAACGGCTAGCTTTGGAGGAAGCAAAGGCCCGGGAGGAGCAG
GTGGCATTTGGAAACCCTCTCATGAATCCCGTAGCCATCAAGCGAAAGTGGAACGAGGAT
GTGGTGTTCCGAAACCAAACCAAACAGGCCCGGAAAGAAGACAGCTATGTCAACGATCTC
ATTCGATCAGATTTCCATCGAAAGTTCATGAACCGTTATGTTCGTTAGAGAGGTGGTGAA
GGAAACAACAGCATTTAATTTATATATTTAATCATAGCACGAAGGCGCGAGATGCAAGGA
TCCCAAATTCCTTCGGATCTAATTCACTCGTCATATATAATAGATTTTACTTGTAATTA

Legend

Locus sequence
Up/downstream sequence

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Translation(s)

YALI0F25421g_CDS-001

Protein length: 216 aa.
Product: Conserved hypothetical protein

>YALI0F25421g_CDS-001 MTTAHRPTFDPARGKSNTQAAGSISHTRSLPSHTKLKYRYARISTNTDAMRKTLLENEGG
LKQAATKLVAEQQQAETQVQDSEKELSDEVKAKIIEENRDDDDSGSDDEESDSDDSDSDS
DDEDELLRIELERIKQERAQAKAREEERLALEEAKAREEQVAFGNPLMNPVAIKRKWNED
VVFRNQTKQARKEDSYVNDLIRSDFHRKFMNRYVR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG