YALI0F24783g

Overview

Description similar to uniprot|P38989 Saccharomyces cerevisiae YFR031c SMC2 chromosome segregation protein
Locus type CDS
Locus tag YALI0F24783g

Location

Species Yarrowia lipolytica Positions 3213988..3217553
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 3566 (nuc.)
Previous locus YALI0F24761g Next locus YALI0F24805r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F24783g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F24783gYALI0F24783g_mRNA-001YALI0F24783g_CDS-001

Nucleotide sequence

 

>YALI0F24783g
ATGAAAGTCGAAGAGCTCGTAATCGACGGCTTCAAGTCGTACGCCACGCGTACAGTCATC
TCCGGATGGGACCCGCAGTTCAACTGTATCACCGGTCTCAACGGTAGTGGCAAGTCCAAC
ATTCTGGACGCCATTTGTTTCGTGCTAGGTATCACGACCATGGCTACTGTTCGAGCTCAG
AACCTCCAGGATCTCATCTACAAGCGAGGACAGGCCGGTGTGACCAAGGCAAGTGTCACC
ATTGTTTTCGACAACTCAGATACCGCCACTAGTCCTATCGGGTTCGAGAAGTACGCCCAG
ATCTCGGTGACCCGTCAAATTGTGCTTGGAGGCACGAGCAAGTACCTGATCAACGGTCAC
CGAGCGCAGCAGCAGACGGTACAGCATTTGTTCCAATCGGTCCAGCTCAATATCAACAAT
CCCAACTTTCTGATCATGCAGGGTCGAATCACCAAAGTACTGAACATGAAGCCTGCCGAG
GTGCTGGCTCTCATCGAGGAGGCCGCTGGAACTCGAATGTACGAGGATCGAAAGGAGAAG
GCTCTCAAGACTATGGCGAAGAAGGATGCCCGGCGCCAGGAAAGTGCATTGCTTTTGGAG
GAGGAAATTAAGCCCAAGTTGGATAAGCTGCGACAGGAAAAGAAGTCGTTCCTCGAGTAC
CAACACACCCAGTCCGACCTCGAGCGGGCTATCAAGCTCATTGTGGCACATGACTACATC
ATGTTGACCCAGGGTGCTCAGGAGATGACCGCCGCTATTGAAGCGATTGTTGCCGAGAAG
GAAGCAAAGGCCCTAGCAGTGGAGCAGAACACACACGAGATGGGCGTGCTCGAGCAGGAC
ATTGCCGAGGTCAAGGCTCGTCAGGCAGCCGAGGCGTCTAAAGATACGAATGTTTCTGTT
CTTCAAAAGCAGGCCAAGGCTGCCTCCCATGAAGTGGTGCGTCTCAACACTACAATCGAC
CTGAAACGGTCCCAGCTTACCGAGGAAGAAGATTCACTAGCCAGTCTTGAGGCTACTGAT
CGAACCGAGGAGCTCCAGAAGCGCCAGGCCGAAGTTGACGCTAGCCAGAGAGAACTGGAC
GCTCAAACACAGCGTCTTGACTCCATGACCAAGGCTCTCGAGTCCAAGCGTGAACTGCTA
CAGTCGCTTCAGACCGGTATCGCATCTTCGGCCGGTAAGGAGTCTGGCTACCAGCGCCAA
CTTGCTGAGGCACGTGAACAGGCCAATGATTCTCGTGTGGCAATTGATCGTGCTCAGATG
CGAATCTCACATCTGACAGAGGCTCTCAAAAGAGACGCTCCCAAGGTCGCCAAGGCTGAG
AGCCAGAACCAGAGCGTGCTCGACAAGCTGGCTGGTCTGCGAGAAGCCAAAGGAGCTCTG
GAAGCTGAAGTGGAGCGTCTTATGGCTGTTCCCGGAGCCGACGAGGACTGGACCGGAAAG
GAGCGCGAGTGCATGTCGCGAATCGATGCTCTTTCTGCTCGAATTGACTCCGAGAAGCGT
CAAGCGTCGTTCTCCGAGTTCACCTACGCTCGTCCTCATGCCAACTTCTCTGCTTCATCC
GTCAAGGGTTTCGTGGCCGAACTGCTGACCATTGGAGATGAGAACATGGACAAGTGCATT
GCTCTGCAGGTTGCTGCTGGAGGCAAGCTGTTCAACGTTGTTGTTGACAATGAGATCACC
GGTAAGGAGCTGCTACAGCGGGGCCGACTCAAGCGACGAGTCACCATGATTCCTCTGAAT
AAAATTGCTGCCGAAGGTCTAATTTCTGCGGAGCGACTCGCCGTGGCCCAGCAGGTGGCC
CCCGGCCGGGTTGGACGTGCCCTAGAGCTAGTTGGATACTCCGATGAGGTTGCTAAGGCC
ATGGCTTATGTTTTTGGCGGCACTCTTGTGTGTGTAGATACCGAGACCGCAAAGAAGTGT
GCTTACCATCCCCAGATTCGTGCTCATTGTGTGACTCTGGAGGGAGATCACTACTCGCCT
GAGGGTACCCTTTCTGGAGGCTCTCAGCAGCGAAGTGGAGATCTTCTCAAGAAGTTGACG
AGCATCAACAACCTTACACAGGAGCTGGAGGAGGCTCGATACGATCTCAGCAACATCCAG
AAGTCCATGGCTCAGTTTTCCAAAGTTATCTCTGAGCGACGACAGCTTGAAAACCAGCTT
TCAATTCGGGAGCACGAGATCAAGACCGGCGAGAAGCAACTGGAGTCTTCTTCCAGTGCT
TCTGTTCTGCGAAAGAAGCAGGAACAGGAGGCCGAGCTTCATGAGCTCCAGGAGTCCCTT
CCCACGCTCAACCAGAAGCTTGAAGACGCCATTGCTCTGATTGGAACTATTGAGAGAGAC
ATGGCTGACTTTGGAAAGAACAAGGGCAGTAAGCTTGAGGAGCTGGCTGCTTCTGTCGAA
GAAATGGCTGCTGAAGTAGCTCAGCACCGGTCTGTTGTTGACGAGGCCTCAGCTGCCCAT
GAGGACATCCAGGTTTCTCTCGAGCAGTTTATGTCCGACATTACTGGTATGAAAGACGAG
GCCGAGGCTTTAAAAGAGGCAATTCAGGCTACCCGAGGCGGCCTTGCTCAACTGGAGACT
CAGCAGGACGAGGCCCGTGCTCTGGAGGCTTCTCTGACCCAGCAGGTTGAGGAGATGATG
GCTGCTCTGCATGGCATGGACGAGGAGCGACGATCTTTGGAGGCTACTCTTCAACAGAAA
CGAGACTTCCATGCCGATGCTCTTGTCGCTGCAAAGGAGGCTGAGCATCTTCATACCCGT
AAGATGAAGGAGCTGGAAGATGCTTCTAAGGGCGCCACTGCCATGGAGGCCAAGTACAAC
TGGGTCGCTGCTGACGCTCACCTGTTTGGCAAGCCCGGATCTCATTATGACTACGAGAGT
GTGGACATCAAGCAGGTGCGACGGGCCGCTGGCCAGTTGGAGGAGCGAATCAAGGGTCTC
GGACACAAGGTCAACGACAAGGTCATGAACATGATTGACAACGTTGAGAAGAAGGAAGCG
ACTCTACGAGGTATGATCAAGACCATCGAGAAGGACAAGGTCAAGATTGAGCAGACCATT
GTGTCTTTGAACGAGTACAAATGCAAGGCTCTGACCAAGACGTGGAAGAAGGTGAGCGAG
GACTTTGGTCAGATCTTCGCGACTCTGTTGCCTGGCTCCTTCGCCAAGCTGGTACTTCTG
GAGGGCAAGGAGATTACCGAGGGTCTGGAAATCAAGGTCATGCTGGGTAAGATTTGGAAG
GAGTCTCTGGCGGAGCTTTCTGGAGGTCAGCGATCTCTAGTTGCTCTGTCGTTGATTCTG
GCTCTGCTCCAGTTCAAGCCTGCTCCTATGTACATTCTTGATGAGGTTGATGCTGCTTTG
GATTTGAACCACACTCAGAACATTGGTCATCTGATCAAGACGCGATTCAAGGGCTCGCAG
TTCATTGTTGTGTCGCTTAAAGAGGGATTCTTCAGCAACGCCAACCGAGTCTTCAAGGCT
CGATTCCAGGAGGGCTCGTCGTCCGTCATTGCCATGTAGGATTTATGTGGGTTGTATTTT
AATGTATTTATATGTATTCGAGTGTC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F24783g_CDS-001

Protein length: 1173 aa.
Product: Subunit of the condensin complex, putative

>YALI0F24783g_CDS-001 MKVEELVIDGFKSYATRTVISGWDPQFNCITGLNGSGKSNILDAICFVLGITTMATVRAQ
NLQDLIYKRGQAGVTKASVTIVFDNSDTATSPIGFEKYAQISVTRQIVLGGTSKYLINGH
RAQQQTVQHLFQSVQLNINNPNFLIMQGRITKVLNMKPAEVLALIEEAAGTRMYEDRKEK
ALKTMAKKDARRQESALLLEEEIKPKLDKLRQEKKSFLEYQHTQSDLERAIKLIVAHDYI
MLTQGAQEMTAAIEAIVAEKEAKALAVEQNTHEMGVLEQDIAEVKARQAAEASKDTNVSV
LQKQAKAASHEVVRLNTTIDLKRSQLTEEEDSLASLEATDRTEELQKRQAEVDASQRELD
AQTQRLDSMTKALESKRELLQSLQTGIASSAGKESGYQRQLAEAREQANDSRVAIDRAQM
RISHLTEALKRDAPKVAKAESQNQSVLDKLAGLREAKGALEAEVERLMAVPGADEDWTGK
ERECMSRIDALSARIDSEKRQASFSEFTYARPHANFSASSVKGFVAELLTIGDENMDKCI
ALQVAAGGKLFNVVVDNEITGKELLQRGRLKRRVTMIPLNKIAAEGLISAERLAVAQQVA
PGRVGRALELVGYSDEVAKAMAYVFGGTLVCVDTETAKKCAYHPQIRAHCVTLEGDHYSP
EGTLSGGSQQRSGDLLKKLTSINNLTQELEEARYDLSNIQKSMAQFSKVISERRQLENQL
SIREHEIKTGEKQLESSSSASVLRKKQEQEAELHELQESLPTLNQKLEDAIALIGTIERD
MADFGKNKGSKLEELAASVEEMAAEVAQHRSVVDEASAAHEDIQVSLEQFMSDITGMKDE
AEALKEAIQATRGGLAQLETQQDEARALEASLTQQVEEMMAALHGMDEERRSLEATLQQK
RDFHADALVAAKEAEHLHTRKMKELEDASKGATAMEAKYNWVAADAHLFGKPGSHYDYES
VDIKQVRRAAGQLEERIKGLGHKVNDKVMNMIDNVEKKEATLRGMIKTIEKDKVKIEQTI
VSLNEYKCKALTKTWKKVSEDFGQIFATLLPGSFAKLVLLEGKEITEGLEIKVMLGKIWK
ESLAELSGGQRSLVALSLILALLQFKPAPMYILDEVDAALDLNHTQNIGHLIKTRFKGSQ
FIVVSLKEGFFSNANRVFKARFQEGSSSVIAM*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG