YALI0F20460g

Overview

Description some similarities with uniprot|Q05950 Kluyveromyces lactis DNA-binding protein REB1 (QBP)
Locus type CDS
Locus tag YALI0F20460g

Location

Species Yarrowia lipolytica Positions 2720187..2722209
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 2023 (nuc.)
Previous locus YALI0F20438g Next locus YALI0F20482g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F20460g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F20460gYALI0F20460g_mRNA-001YALI0F20460g_CDS-001

Nucleotide sequence

 

>YALI0F20460g
ATGCCCAAGGAGGGTAAGCCCGCGCAGGAAGGCGCACAGGCGCTGCTGGATCTCCAAGAC
GAAGGCAAGGATCCTCGCAATGTCAAGGATGACAAAAAGACGAGCGATGGCAACAATACC
AAGGACGACGTGGGCGAGGAGACCGTCGAGGGCGCTCTGATGCATCTGGTGCGATTCACT
CAGGACGAGGAGAAACGCGAAAAGGAGAAGCCCGGTGTTGGTGTCGGTAACAACGGAGGA
GCTCCTGCAGGCCAGCAACAACAGCAGCAGCAACAGCAGCAGCAGCAGTACGAAGACATT
GCTCATTATGGGGAATTTCTCAACGACAATTCTGACACGCCATGGAACCAGAACCTGTTT
TCGGAGCAGTTTGCCGTCGCAGCTGCCACTGCTGCCGGCGAGGGAGACTTCCAGGAAAAA
TTCAACAAGGAATTCAGCAAGGAGTTCAACAAGGAGTTCAGCAAGGACGAGTTCAACGAG
ATGGTGGCTGCTGCCGCTGTCGAGATTGGATCTGGAGGCGCTCCCCAGCCTGGCGCAGGT
ACAGAATCAGACGCACAGGCTCACGGACGGAAACGAAAACGTCAAAAGACGTCGCTCAAC
CCCAAACAGGACCTGAACGTGGATCCTGTGCTCGAGGGACTCGGAGAGGCCGTCAAGGGA
GGAGACAATCTGCTCCTGATGGACGATTTCCGACGAACAGCAGGAGTTCCAGGTCACCCC
CACGACCACCCTGTCACGTCACGTGACTACATCATGCCTCCCGAGTCTATGGTCGCGATG
CGAAACACCAGCAACGCTCCCAAGGTTGCAGCCTCGAAACGCCCTAATTGGACAGGTGAC
GGTTCGGAGTCTGGAGGAGCATTTACTCCCGAGGAGATCGAGAAGCTCGAAGAGTATATT
GAGGGCTACTGCCAATCCCATGTGTGGGATCGAGAAATGCTTTGCCAGCGAGTGTGGTCC
AACGAGCGCAAAAAGGACCATTTCTGGGACTCCATGGCCGGTGTGTTACCCCATCGAACA
CGTGCTTCTGTATATAAACACGTTCGACGAGCATATCACGTGTACGAGACGCGGGCAAAA
TGGACTCCTGACCAGGATAAGCGGCTGGGAGACCTGGTGGGTGAAATTGGACCTTGCTGG
AAGGACATTGGACAGGTTCTCAACCGAATGCCTGAGGATTGTCGAGATCGGTGGCGAAAC
TACGTCAAATGCGGTAACAACCGAGCCTCTCATAAATGGACTGCCTCTGAGGAAAACAGA
CTTTACGAGATTGTTCGTGATATGCTGAGTGCCCAGGGAGAAGTTGGCGGTAACATCAAC
TGGACTGCTGTTTCCGAACGCATGAACGGAACTCGGTCTCGAATTCAGTGTCGTTACAAA
TGGAAGAAGCTGAGCAAACGGGGTCCCAACCATCATGCTGCTCTGACAATGACCACTACC
GACCACCAGGTGTTCCTCAAGCATCTGGATGTCAATGATTACGCCTCCGAGGAGCAGATT
GACTGGCAAACGATCGCTGCCATGGACTCTCGAAACCTATGGGCTGCCAGTGATCTTCAG
GAGGCTCTGGAGCGACTCAAAAAGGATGTGCCCGACTGGGACTCGCGAAGTTTCAGGGAA
AACATCCAGTTGCTGGCCAAACGGGCTGCGGACGGCGAGAACTTGGGCCAGGCGCAGCTG
CCAGGCCAACCGCAACAACTGCCGGGAGCAGCGATGGCCGGGGCTTCGATGCAGGGACAG
CCCCTGCAAGGTCAGCCAATGGCAGGCCAGCCGTTACCGGGCCAACCACCTCATGGTGGA
CACGGTCACGACGAAGCGACCGGTATCAAAAAAGATAATAGCAAGGAGTACGAGATGCCG
TCGTTCAACTGGCACCAATTGGCCGACGCGCAGATCAGTTAGGGGGATGGAGAAGATGGA
GATTGGCTGGCATGCCGAATGTATAATAGATTAGGAGACTTCGGTGTATTATTATTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F20460g_CDS-001

Protein length: 634 aa.
Product: Conserved hypothetical protein

>YALI0F20460g_CDS-001 MPKEGKPAQEGAQALLDLQDEGKDPRNVKDDKKTSDGNNTKDDVGEETVEGALMHLVRFT
QDEEKREKEKPGVGVGNNGGAPAGQQQQQQQQQQQQYEDIAHYGEFLNDNSDTPWNQNLF
SEQFAVAAATAAGEGDFQEKFNKEFSKEFNKEFSKDEFNEMVAAAAVEIGSGGAPQPGAG
TESDAQAHGRKRKRQKTSLNPKQDLNVDPVLEGLGEAVKGGDNLLLMDDFRRTAGVPGHP
HDHPVTSRDYIMPPESMVAMRNTSNAPKVAASKRPNWTGDGSESGGAFTPEEIEKLEEYI
EGYCQSHVWDREMLCQRVWSNERKKDHFWDSMAGVLPHRTRASVYKHVRRAYHVYETRAK
WTPDQDKRLGDLVGEIGPCWKDIGQVLNRMPEDCRDRWRNYVKCGNNRASHKWTASEENR
LYEIVRDMLSAQGEVGGNINWTAVSERMNGTRSRIQCRYKWKKLSKRGPNHHAALTMTTT
DHQVFLKHLDVNDYASEEQIDWQTIAAMDSRNLWAASDLQEALERLKKDVPDWDSRSFRE
NIQLLAKRAADGENLGQAQLPGQPQQLPGAAMAGASMQGQPLQGQPMAGQPLPGQPPHGG
HGHDEATGIKKDNSKEYEMPSFNWHQLADAQIS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG