YALI0F19558g

Overview

Description weakly similar to uniprot|P40066 Saccharomyces cerevisiae YER107c GLE2 required for nuclear pore complex structure and function
Locus type CDS
Locus tag YALI0F19558g

Location

Species Yarrowia lipolytica Positions 2604292..2605740
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1449 (nuc.)
Previous locus YALI0F19536g Next locus YALI0F19580g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F19558g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F19558gYALI0F19558g_mRNA-001YALI0F19558g_CDS-001

Nucleotide sequence

 

>YALI0F19558g
ATGAGCATAAGTGAGTATCCGTTTGATTTTTCTTCTTGTCAGCGACATTTTCTAACCCAG
TTCAAATCGACGCTTTGCCCGATTTAATATCGAAGGTCACATGGGGTCCTCAGAAGCATC
TGCTTGTGTCTTCCTGGGATACTAAACTGCGTCTGTACTCTGTCAGTCACGACAATTCTC
GACAGGTCACAGAGGTGTCTGCATCCAGCCCGATTCTCGACTGTTGTTGGGGGGACAACG
GTGTTGCATTCACAGGAGGATTGGCAGGTGTGGTTGAAGCAATAGATCTTCAGGCAGGAG
AACTTTTGAGCATAGGACAACAGCATGCAGATGCCATCTCGTCAGTGGTTTGCGATGCCG
GCAACAATCTGATTGTGTCGGGTTCGTGGGACAAGAACCTGCAATTCATTGACGCTCGGG
GAGGTTTTGGAAACAAGGACAGCTCTATGATGATTCCCACAGCAGGCAAGGTCTACACCA
TGGACAAGGCTACCAACTCCAACTATGTGGTTTGTGGTCTGGGCAACCGCCAGATTCACA
TTTACGACATTCGAAACATGGGCCAGGTCTTTCAGCGTCGAGACTCGTCCCTCAAGTTCA
TGACTCGAAAAGTAAGAAGTATGCCTGATGGAAAGGGATACGCCAACACATCGATCGAAG
GCCGAGTTGCGGTAGAATGGTTTGACCCCTCGCCTGAAGTCCAGGCACAAAAATATGCAT
TCAAGTGCCATAGGGCCAAGGAGCCTGACGCCCAGGGTCGAATTGAGGTTCATCCAGTCA
ACGGAGTGGCCTTCCACCCAGCCACACCCGCATTCTTCACTGGAGGATCAGACGGTGTGG
TCTACTGCTGGGACGGCAAACAGCGCCGACGTCTCAAGCAGTACCCTCATATGCCCACCA
GTGTCATGGGTCTGGACGTGGACTCTACATCCGGCGACATGCTGGCCATCGCATGTGCTG
ATGACTCTTTCAAGGAGAATCCTAATGGAGCATTAGCCAAAAGCTCATTGCACGTTAGAT
TTCTGGATGGAGAGGGCTTATAATTGGCCATCTATCTATCACTACTTGTAGCTACTTGTA
GCTAGTGTCAGTCTTGCAATTAGGGTATAGATTGACTTCAAGAGCGTGAAAACTTGAATT
ATGGAATGGACAAGAGATACGGTAAAAACCGAGCCACCTGAGGCTTGGTTAATGCATAGA
CACTGTCCAGTCTTCCATATCTATCGGAACAAAGTCCCCAATTGGTTACACACACTTCCG
ACAGAAGCCGCAGCCCCCTGTCTCCAGGTTTATGGTTCTGGTAGCTCAGCCGTGGCTGAA
GCACGCAATGGAAGGTAAAGGAGGGTCTAAAATTGCCATTTGTGCGAATCAACAGGTATA
TCGCACCATTTCGGATAAATTAATCAGCTTATAATTACAAAACAAATGCCGTTATTTACC
AACATCTGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F19558g_CDS-001

Protein length: 331 aa.
Product: Conserved hypothetical protein

>YALI0F19558g_CDS-001 MSIIQIDALPDLISKVTWGPQKHLLVSSWDTKLRLYSVSHDNSRQVTEVSASSPILDCCW
GDNGVAFTGGLAGVVEAIDLQAGELLSIGQQHADAISSVVCDAGNNLIVSGSWDKNLQFI
DARGGFGNKDSSMMIPTAGKVYTMDKATNSNYVVCGLGNRQIHIYDIRNMGQVFQRRDSS
LKFMTRKVRSMPDGKGYANTSIEGRVAVEWFDPSPEVQAQKYAFKCHRAKEPDAQGRIEV
HPVNGVAFHPATPAFFTGGSDGVVYCWDGKQRRRLKQYPHMPTSVMGLDVDSTSGDMLAI
ACADDSFKENPNGALAKSSLHVRFLDGEGL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG