YALI0F16335g

Overview

Description some similarities with uniprot|P23179 Saccharomyces cerevisiae YHL022c SPO11 catalytic subunit of the meiotic double strand break transesterase
Locus type CDS
Locus tag YALI0F16335g

Location

Species Yarrowia lipolytica Positions 2184199..2185212
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1014 (nuc.)
Previous locus YALI0F16313g Next locus YALI0F16357g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F16335g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F16335gYALI0F16335g_mRNA-001YALI0F16335g_CDS-001

Nucleotide sequence

 

>YALI0F16335g
ATGGACCAAGACGACACAAAAGCTATCATCAACAAAACAATCTCGCGACTGAAGAAGCAG
TTTCACGAAGACATCTCCTCTGCCTCCATTTTCGAAACCCATGCTTCCAAAGGGATACCT
CTGACCACACTCTGTGGTAACTCGGTCAACCGGTTCTCAATCTACCTGAGACTGTTGCAA
ATCATCAAGAGTTGTTTGGACAAGGACAAAATCACCACAAAAAGAGATATCTACTACGAC
GCCGTGAATCTGTTCAAAACCCAGGGAGTCGTGGATAGCTGCATTGCTAGAATAACTAAT
GATTTTTTGCAAGTACCTCGTGACTCTCTCAATGTGGTGGCAGCTCAAAAGGGACTCATT
TATTCGGCATGCGATTCAGCGTTGACAATTTCGTACAAGGACGACTACAGAGCTCCAGTG
ACAATACCTACACATACCACAACATTGATACCCTACACCACAAACATCAGCGATATCCAA
CTGGCTCCTCAAGTAAATTGTATTTTGATCGTTGAGAAAGAGGCGGTTTTCACAACCCTG
TGTGCCTACATACCCAAAGATACCCTCTTGATAACTGGCAAAGGATACCCCGATCACATG
ACCCAAGACTTTGTGCGTCTTTTTGACGAGATGCTGCCTCTATTCATATGTGTCGACGCT
GACCCTCATGGAATCCACATTGCCGCAACTTACCGATACCGCTCGTTTGTCAGGGCTCCT
TCATTGCAGGGGCTGGGGTCCTCGATATCATATATTGGTGTTTCTCTTGTTGATTTTAAG
CGTGGCCACCTCCCATTAGAAGACAAGAACCGCAAGCACGCCGGGCGGCTTCTCTCCGCT
ATAACTGGTCGTCAGGCGGAAGCTCTAGAGTTGGGAGACTACATTGAGATGAACAAGTGG
AAACTGGAGCTTCAACGGATGCTGTTTCTTGGCAAGGTTGCTGAGATGAACGTTGCTGGA
GACGGCAGTGAAGGTAGGAATTTGGCCCGTTATATTTTTGACAGGATCCATTAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F16335g_CDS-001

Protein length: 338 aa.
Product: Conserved hypothetical protein

>YALI0F16335g_CDS-001 MDQDDTKAIINKTISRLKKQFHEDISSASIFETHASKGIPLTTLCGNSVNRFSIYLRLLQ
IIKSCLDKDKITTKRDIYYDAVNLFKTQGVVDSCIARITNDFLQVPRDSLNVVAAQKGLI
YSACDSALTISYKDDYRAPVTIPTHTTTLIPYTTNISDIQLAPQVNCILIVEKEAVFTTL
CAYIPKDTLLITGKGYPDHMTQDFVRLFDEMLPLFICVDADPHGIHIAATYRYRSFVRAP
SLQGLGSSISYIGVSLVDFKRGHLPLEDKNRKHAGRLLSAITGRQAEALELGDYIEMNKW
KLELQRMLFLGKVAEMNVAGDGSEGRNLARYIFDRIH*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG