YALI0F13354g

Overview

Description similar to uniprot|P32914 Saccharomyces cerevisiae YGR063C SPT4 Protein that forms a complex with Spt5p and mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing
Locus type CDS
Locus tag YALI0F13354g

Location

Species Yarrowia lipolytica Positions 1795687..1796162
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 476 (nuc.)
Previous locus YALI0F13343g Next locus YALI0F13365g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F13354g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F13354gYALI0F13354g_mRNA-001YALI0F13354g_CDS-001

Nucleotide sequence

 

>YALI0F13354g
ATGTCTACTCGAACTGAGCGAGCATGTATGCTCTGTGGAATCGTCCAGCCGCTCAAGGTG
AGTATCACGTGACCTGATCTATTGTTTCACCTACTAACCCAGGCTTTCATTTCCAAGGGA
TGTCCTAACTGCGATTCGGTGCTCGACATGAAGGCCGACGATAGTCTGACACAGGACTGC
ACCAGTCCATGTGAGTATGAAGAGGGACGACAATTGATGGATCTTTTTGTTTGAAGCTTT
GACTAACCCCCAGCATTCGAAGGCCAGGTGGCGCTCTGTGACCCCAGCTCATCGTGGGTG
TCCAAGTGGCTGCGAATCGACGGCTTCCAGCCCGGTCTGTATGCCGTCAAGGTGAATGGA
AAGTTGCCGCAGGACATTGTGGATGATCTGAAGAGCAAGGGTGTGGTTTACCGACCTCGA
GACGGCTCTGCCCAGGATTAGCATGTATTTATAAATGGATGTATATTACTAAGCCA

Legend

Locus sequence
Up/downstream sequence

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Translation(s)

YALI0F13354g_CDS-001

Protein length: 111 aa.
Product: Component of the universally conserved Spt4/5 complex (DSIF complex), putative

>YALI0F13354g_CDS-001 MSTRTERACMLCGIVQPLKAFISKGCPNCDSVLDMKADDSLTQDCTSPSFEGQVALCDPS
SSWVSKWLRIDGFQPGLYAVKVNGKLPQDIVDDLKSKGVVYRPRDGSAQD*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG