YALI0F12815g

Overview

Description some similarities with uniprot|P41895 Saccharomyces cerevisiae YGR186w TFG1 TFIIF subunit (transcription initiation factor), 105 kD
Locus type CDS
Locus tag YALI0F12815g

Location

Species Yarrowia lipolytica Positions 1718308..1720181
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1874 (nuc.)
Previous locus YALI0F12793g Next locus YALI0F12826g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F12815g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F12815gYALI0F12815g_mRNA-001YALI0F12815g_CDS-001

Nucleotide sequence

 

>YALI0F12815g
ATGTCCAAGCAGCCGACGAACCCGTTGATGCGCAGCAAGAAGTACGACTCGCCGTTGCGA
CGAGATCGGCCGTCTCTGCGCCCGCAGATGCGTAAGGGCCCCATCAACATTCCTGCGCGA
CCAGGCCACAAGTTCATTCAAAGCACGCCTGGTGTCAAGAAGGAGGAAAACGAGCCCAAA
TACAAGGAGTACTCGCTGGTGGCTGCGTCCAAGGACGAGCTCAAGGACCTGCGATACCAC
ATTATGCGACTGCACAGTATCAAGAACGTAGACCCCGGCGCCGACTTCACTCCCCCCATC
AAGTTGCACAGAAAAGACCCTCGAAACCTGCAGTTCCAGGCAACACAGGAGGAGCAGGCG
GCCGAGTCCAACGCCGACAGTGGCGCTGAGGAGGGGACGGAGCCTGTCAAGCGAGAGCAG
GCCGATCTGTCGAAAATCGCGCCGGATGGAGGAGCCCGACACGCCAAGAAAAACCAGTTC
AACAAGAAGGCCAAGCAGGTGATCCACAGAGACGAAGATGCCAAAAAACTGCGGTATGAG
GAGTACTACCCCTGGGTAATGGAGGACTACAGTGGCAAGAACACGTGGGTGGGCAACTAT
GAGGCAGCCCAGAGCGACTCGTACTGCGTCTTTGTGTTCCACGGTAACGGCTTCAAAATG
GTGCCTGTCGAGAAGTTTTACAAGTTCACGCCGCGAAACCAGTATGCCACGTTGACGCTT
GAGGAGGCCGAGAAGCGGATGGCAGACAGTGTCAAGGCCGGCACCCCTCGATGGCTCATG
AAACACATGTCGCCCGAGATGCAGCAATCGCGAATGCGAGATCAGCGCCCACGCAAGTTC
CAGACTGTCGACAGTGGGGGGCCTGTGGATGACGACGATGGGCTGTCTCGTCGACGAGAG
CGAGATGATGAGGATCTCGATTTCGACCACGTCTTTGACGACGACGAAGAGGCGCCGATC
ATGGACGGAGACGAGGAGGACCAGAAGGAAGTGGAGCGAAAGATGAAGAACGAGCACCGA
TCGGCAGCCGTTCTGAAGGACGATAACCACGACGACATGGGCGACCTGTTTGGAGAAGAG
GAGGAGGAGAAGATGGACAAGGAAGGTCGTAAGTTGAAAAAGTATCTGCGGTCACTGGAG
AAGAATGCTCATTACGATTCGGATGACGATGAGAACCCCTACGCTTCTTCTTCCGAAGAC
GACGACGACGAAGAAGATGGTATCAAGAAGGAAGACCCCGTCAAGAAGGAGGAGGATCTG
GCCATCAAGGAGGAACCCATGCCGTTGTTTGTCAAGAAAAACATTACTGGCCTGCCCCGC
GGCATGGCTGTCATCCAGCTGCCTCCTCATGTTCTCGCCAAGTTCACCCGAGGAGTGTGG
AACCCCAATGCCAAGCGTCCTCGAGAGGCTGGCGGAGAGTCTGGAGATGCTAAGCGGCCC
CGAACCGCGGATGCTGATCTACCTCCTCCCTTTGGACCCAACGACACGGTTCTGTCCGAC
GACATCATTCTCAACACGCTGCGAAGCCGACCCCCCATGGCCGTGCAGGATCTGCTGCGA
ATTCTCATGCCCATTATGCGCAAGGATGCCGACAACAAGGCTCGTCTGACGGCTTGTCTC
AAGAAACACGCAAAGGTCCAGAACGGAGTGCTGGTGCTGAGAGAGTAACAAGATAGAATG
TAGGAGATATCCCTTTGAAACAGATACATAAGATAAATATTATAGCATGGGTTTGGTTGG
AGGGGGTGAATGGGAGAGACGTAGTTCTAATATGGAAAATGCGACTCCGTTAAGTACGTC
ACAGGTCCTAAGATGGTCCCCCTACGGTCCTGTTCTGTCTCTCCCCTCTTGTCTGAACCA
GTGTGTTTATCGGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F12815g_CDS-001

Protein length: 556 aa.
Product: Conserved hypothetical protein

>YALI0F12815g_CDS-001 MSKQPTNPLMRSKKYDSPLRRDRPSLRPQMRKGPINIPARPGHKFIQSTPGVKKEENEPK
YKEYSLVAASKDELKDLRYHIMRLHSIKNVDPGADFTPPIKLHRKDPRNLQFQATQEEQA
AESNADSGAEEGTEPVKREQADLSKIAPDGGARHAKKNQFNKKAKQVIHRDEDAKKLRYE
EYYPWVMEDYSGKNTWVGNYEAAQSDSYCVFVFHGNGFKMVPVEKFYKFTPRNQYATLTL
EEAEKRMADSVKAGTPRWLMKHMSPEMQQSRMRDQRPRKFQTVDSGGPVDDDDGLSRRRE
RDDEDLDFDHVFDDDEEAPIMDGDEEDQKEVERKMKNEHRSAAVLKDDNHDDMGDLFGEE
EEEKMDKEGRKLKKYLRSLEKNAHYDSDDDENPYASSSEDDDDEEDGIKKEDPVKKEEDL
AIKEEPMPLFVKKNITGLPRGMAVIQLPPHVLAKFTRGVWNPNAKRPREAGGESGDAKRP
RTADADLPPPFGPNDTVLSDDIILNTLRSRPPMAVQDLLRILMPIMRKDADNKARLTACL
KKHAKVQNGVLVLRE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG