YALI0F12749g

Overview

Description similar to uniprot|Q03529 Saccharomyces cerevisiae YMR272c SCS7 required for hydroxylation of ceramide
Locus type CDS
Locus tag YALI0F12749g

Location

Species Yarrowia lipolytica Positions 1706800..1708139
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1340 (nuc.)
Previous locus YALI0F12727g Next locus YALI0F12771g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F12749g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F12749gYALI0F12749g_mRNA-001YALI0F12749g_CDS-001

Nucleotide sequence

 

>YALI0F12749g
ATGACCAATCTGCCCCTTCTCACCCGAAAAGAGGTGGAGAGCCACAACACCAAGAGCTCG
TGCTACGTGACCGTCGACAACCTCAAGGTCTACGATGTGTCTTCTTTCCTGGAGGAGCAC
CCCGGAGGAGGAGACCTGATTGTGGATTTTGCCGGTAAAGACGTGACGGAGATTATGGGC
GACCTGGTGTCCCACGAGCACTCGGAGGCTGCCTACGAGATGCTGGACGAGCTCTATCTG
GTGGGAATTCTCGCTACCCCCGAACAGGAGGCCAAGTTGCTCACCAGAGAAAACCGACAC
GACTTCAAGCTGGAAAAGAACGCCGAAGACGAACTCACTGTCACCACTGACTTCACCCGA
GACTACAAGACCAACCAGTTCCTGGACCTCAACAAACCCCTGCTGATGCAGGTGCTGCGC
GCCAAGTGGACCAAGGAGTTCTACCTGGAACAGGTCCACAAGCCCCGACATTACGGCAAC
GGAAGTGCGCCCATCTTCGGAAACATCCTCGAGCCTCTCTCCAAGACCCCCTGGTTCGTC
GTTCCCTGTCTGTGGATCCCCGTCGACCTCTACTGCATCTACCTGTCCGCCCAGGGACTG
CCGTTCTACTGCATCATCCCCATGTTTGCCTTTGGTCTGTTTGTGTGGACCTTCATCGAG
TACGGACTCCACCGGTTCGCCTTCCACCTCGATGACCACCTCCCCCGATACCAGGTTGCG
TACGCACTCCATTTCCTGCTCCATGGCGTCCACCACTACCTCCCCATGGACAAGATGCGA
CTGGTTCTTCCCCCCACTCTGGGCGTCATTCTCATCACCCCCTTCTACTTTCTTGCATTT
GCTCTCTTCCCTTACTACTGGGCCTATGCTGGCTTTGCAGGTGCCTTCCTGGGCTACATC
ATGTACGACTGCACACACTACTTTTTGCACCACATGAACCTGCCTCCTTATTTTAAGGCC
CTCAAGAAGTACCATCTGGACCACCACTACAAGAACTACGAGCTTGGATTCGGAGTCACC
AGTTCTTTCTGGGACAAGGTGTTCAACACCGAGTTGGTTGAGACCAGTGTGAAGAGCAAG
GGCTTGTAAGATGAGCGCAGCGAGTCTTGCTAGGACTTGTAGAGCGTCTTTGAGCGCCTT
TCTGCAAGTGTGATGAACGAGTTGGAGCCGGTGATGACCACAAGATTTGTGTTCCAGTTC
GTTACAACTGTTGGCGGTTTTTACGCTGGCGGATTCAGTGCTATGCTTCTTTTAGCACAT
ATTTATGAACATATAGGTAAATGGGTGAATGATACTTTACATAATTAATTAATAGTAACA
CTAGTTACGTCTTTTATAAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F12749g_CDS-001

Protein length: 363 aa.
Product: Sphingolipid alpha-hydroxylase, putative

>YALI0F12749g_CDS-001 MTNLPLLTRKEVESHNTKSSCYVTVDNLKVYDVSSFLEEHPGGGDLIVDFAGKDVTEIMG
DLVSHEHSEAAYEMLDELYLVGILATPEQEAKLLTRENRHDFKLEKNAEDELTVTTDFTR
DYKTNQFLDLNKPLLMQVLRAKWTKEFYLEQVHKPRHYGNGSAPIFGNILEPLSKTPWFV
VPCLWIPVDLYCIYLSAQGLPFYCIIPMFAFGLFVWTFIEYGLHRFAFHLDDHLPRYQVA
YALHFLLHGVHHYLPMDKMRLVLPPTLGVILITPFYFLAFALFPYYWAYAGFAGAFLGYI
MYDCTHYFLHHMNLPPYFKALKKYHLDHHYKNYELGFGVTSSFWDKVFNTELVETSVKSK
GL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG