YALI0F06292g

Overview

Description highly similar to uniprot|Q09176 Schizosaccharomyces pombe Splicing factor U2AF 23 kDa subunit
Locus type CDS
Locus tag YALI0F06292g

Location

Species Yarrowia lipolytica Positions 934413..935567
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1155 (nuc.)
Previous locus YALI0F06270g Next locus YALI0F06314g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F06292g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F06292gYALI0F06292g_mRNA-001YALI0F06292g_CDS-001

Nucleotide sequence

 

>YALI0F06292g
ATGGCCAGCCACCTAGCTTCGATATACGGAACGGAAAACGACAAAGTGAACTGGTGAGTG
TCAGAAAGGAGTTATTTGAGTGTTTTGAACCCCCGCGCGGGCTGGTGTTGGTGTTTTGGC
CGATCGTTTGCTCGTTTAGACGGCTTGTGATGCATACCAGAGTGGTTGTCGAGAACATGG
TGTGTGAGAGACGCAGATGTTTGCGGCCTGTTGGTGTCTGTGATAGTTGTTAGTCCAGCC
AAGTGTTGGAAGACAGACTGTCTGTCTATCTATGACTTCTTATCGCTAGACATGTCACTA
CAGACGACAGTTGTCAGCTGCTGGATAGGACCACTACATCATGTTGTTGCACTGGTGATG
CATAGAGAAGTTGATACGGATAGACACAGCAAGCCAAGGTGGGAAAAGCAAACGAGACGT
ACTTTGATATGTTGCTAGCTTGTTCTTGACTCCTTGAGCCCATCTGTTCTCCTGTGACGA
CTCTCAACCCGAGACCGTCAAACCCCCTACTACATACATACTAACCCAGCTCATTTTATT
ACAAAATCGGCGCGTGCCGTCACGGTGAAAAGTGTTCCCGAAAACACGTCAAGCCCACCT
ATTCCAACACAGTGCTGTGCTCGAACCTGTATCAAAACCCAGCTAATGGCGAATCAGATC
CTCTCAATGAGGACGGATCGAAGATGACCAAGGCGGACCTCGACAAGCACTTTGCACTCT
TCTACGAAGACATTTACATGGAGGCAGCCAAACTGGGACGCCTGGAGGAGATGATTGTGT
GCGAAAACGGCAACGATCATCTCACGGGAAACACATATCTGCGGTTCCGGAACCAGGAGG
ATGCTCAGAGGGCATGCGACCTATTCAACACACGGTGGTATGCCGGACGGCCCGTTTGGT
GCGAACTAAGTCCCGTCAACGACTTCACCGAGTCGTGTTGTCGCCAGCATGACACCAATG
AGTGTTCGCGAGGCAACATGTGCAACTTCATGCATGCCAAACGGCCTCCACGACAGCTGG
CAAAGGATCTGGACGCTTCTCAGCGGAAATTTTATAACCGTCAGAGGGACCGAAAGTCCA
AGCGGTAGATTGGAAGTCGATTGTTGACTGATGTATTATATATATATATTTAATGAGCAT
AACAGTATTGGATCA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F06292g_CDS-001

Protein length: 204 aa.
Product: Splicing factor U2AF 23 kDa subunit, putative

>YALI0F06292g_CDS-001 MASHLASIYGTENDKVNCSFYYKIGACRHGEKCSRKHVKPTYSNTVLCSNLYQNPANGES
DPLNEDGSKMTKADLDKHFALFYEDIYMEAAKLGRLEEMIVCENGNDHLTGNTYLRFRNQ
EDAQRACDLFNTRWYAGRPVWCELSPVNDFTESCCRQHDTNECSRGNMCNFMHAKRPPRQ
LAKDLDASQRKFYNRQRDRKSKR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG