YALI0F05588g

Overview

Description similar to uniprot|Q06214 Saccharomyces cerevisiae YPR169W JIP5 Essential protein required for biogenesis of the large ribosomal subunit
Locus type CDS
Locus tag YALI0F05588g

Location

Species Yarrowia lipolytica Positions 832419..833566
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 1148 (nuc.)
Previous locus YALI0F05566g Next locus YALI0F05610g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F05588g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F05588gYALI0F05588g_mRNA-001YALI0F05588g_CDS-001

Nucleotide sequence

 

>YALI0F05588g
ATGGCGAAAAAAGAAACCAAACACACGCCGCTGACAAAACTCAAGTTCCAGGACCCCATC
TTCGGCATCTCGTTCCACCCGGAACAACCGCGGTTCGTCGTGGGCTCGTCCACAGGAACA
GTGACGGCATACAAGTACAGCGTGGACCCACAATCCGCTACCTGTGGAGCCCCCGAGGTG
GTGTGGACCACCAAGAGACACAAGGGTAGCTGCCGGGCGCTCATCTACTCGGAGGACGGC
TCATCTGTCTACTCCGTGGGCTCTGACGGAGTAATCAAACGAGCCGATTCCCAGTCAGGC
AAAGTGCGAGCCAAGAACACAGAGTCCCTGCCCTCCACGCCGTCGTGCATCGTGCGATCC
GAGGCGTACGTGGCGGTTGGATGCGAAGACGGCTCGATTGTAGCGTTCGACAAGACCAGT
CTGGCAGAGAAACACCGGGCCGAGGGAGCCCATGACGGAGAGTGTGTCAACGCTCTGCTT
GAGCTGACTCATCAGAACAAACACTCGTTTGCATCGCTCGGCTCAACTACCGCCTGTGTG
GTCGACGTGCGGAAGGGCGTCAAATCCACCTCCGACGACCAGGAAGACGAGATTCTGTGC
GGAACCATGGCGGCCAAAGACATGGGAGTGTGTGGCATGTCCCAGGGACAGATCACAACG
TGGACCCTGGGATTCAACGACCAGCAGAACCGAGTCAAGCTGTCAGAGGAGTCCATTGAC
GCTGTTATCGGCGCGGAAGACGACTACGAGGTGTACGCTGGAGGAGGAGAGGGAATCGTG
TGGCTGGCCAACGTCAAATCAGGCAAGAAACTCGATCAGTTTGTGCACTCGCGCAACGAC
GAGGTTTCGTTTCTTGACCTGGATTACCAGTACCGGCTCGTCACGGCTTCCATGAACTCG
CTCAAACTGTGGCCCACGGCTGACGACGAGCAGAAACAGGCCGAGGTGGCTGCCGCAAAG
GGAGCCGAGGAGGAACAGAAAGCTGCGCCGTCTGGACCGCCCCGAAAGAAGCACAAAAAG
GTCAAGAACAAGGCCCATAACCCCGGAGTTGCCCATTTTGGAGATCTCTAAGCAGCCGCT
GTTCAGACTCAGACAAGTCACTATTAAGATCATTGTATATATATCTATTCACAGAGTTGT
GTCAGTTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F05588g_CDS-001

Protein length: 357 aa.
Product: Essential protein required for biogenesis of the large ribosomal subunit, putative

>YALI0F05588g_CDS-001 MAKKETKHTPLTKLKFQDPIFGISFHPEQPRFVVGSSTGTVTAYKYSVDPQSATCGAPEV
VWTTKRHKGSCRALIYSEDGSSVYSVGSDGVIKRADSQSGKVRAKNTESLPSTPSCIVRS
EAYVAVGCEDGSIVAFDKTSLAEKHRAEGAHDGECVNALLELTHQNKHSFASLGSTTACV
VDVRKGVKSTSDDQEDEILCGTMAAKDMGVCGMSQGQITTWTLGFNDQQNRVKLSEESID
AVIGAEDDYEVYAGGGEGIVWLANVKSGKKLDQFVHSRNDEVSFLDLDYQYRLVTASMNS
LKLWPTADDEQKQAEVAAAKGAEEEQKAAPSGPPRKKHKKVKNKAHNPGVAHFGDL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG